Factsheet for Bra039620.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46301	Canola	cytosol	99.47	99.47
AT2G18280.2	Thale cress	cytosol	90.74	87.06
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	31.48	66.85
GSMUA_Achr2P23080_001	Banana	cytosol	23.81	66.18
KRH28692	Soybean	cytosol	68.78	62.8
GSMUA_Achr6P09030_001	Banana	cytosol	59.52	62.15
KRH76777	Soybean	cytosol	67.99	61.93
PGSC0003DMT400058090	Potato	cytosol	66.14	61.58
Solyc03g033980.2.1	Tomato	cytosol	65.87	61.33
VIT_04s0023g01950.t01	Wine grape	cytosol	66.67	61.02
PGSC0003DMT400009280	Potato	cytosol	65.34	60.69
KRH69894	Soybean	cytosol	66.4	60.63
Solyc02g085130.2.1	Tomato	cytosol	65.87	60.58
Solyc04g071750.2.1	Tomato	cytosol	64.02	60.5
PGSC0003DMT400040088	Potato	cytosol	65.61	60.49
Solyc02g062670.2.1	Tomato	cytosol	65.34	60.1
KRH08239	Soybean	cytosol	65.61	59.9
PGSC0003DMT400016310	Potato	cytosol	63.49	59.85
GSMUA_Achr2P22940_001	Banana	cytosol	55.29	56.95
Bra040862.1-P	Field mustard	mitochondrion, nucleus	58.2	55.56
Bra015624.1-P	Field mustard	cytosol, mitochondrion	58.73	55.09
TraesCS6D01G252800.1	Wheat	cytosol	61.64	54.82
EES07397	Sorghum	cytosol	62.7	54.73
TraesCS6B01G300200.1	Wheat	cytosol	61.64	54.69
HORVU6Hr1G068970.3	Barley	cytosol	61.11	54.1
TraesCS6A01G272800.1	Wheat	cytosol	61.38	54.08
Zm00001d017773_P001	Maize	cytosol	61.9	53.55
Zm00001d051568_P001	Maize	cytosol	61.38	53.21
Bra020754.1-P	Field mustard	cytosol	47.88	52.62
Bra024763.1-P	Field mustard	cytosol	59.52	51.37
Bra021446.1-P	Field mustard	cytosol	53.17	50.0
Bra010985.1-P	Field mustard	cytosol	57.94	49.89
Bra012486.1-P	Field mustard	cytosol	57.14	48.76
Bra041095.1-P	Field mustard	cytosol, mitochondrion	47.35	47.48
Bra040803.1-P	Field mustard	cytosol	55.82	47.2
Bra002179.1-P	Field mustard	mitochondrion	49.47	46.87
Bra030942.1-P	Field mustard	mitochondrion	46.83	45.15
Bra015711.1-P	Field mustard	cytosol, mitochondrion	54.5	44.3
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.39	43.77
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	19.84	38.07
GSMUA_Achr10P...	Banana	nucleus	20.37	36.67
Zm00001d033948_P004	Maize	cytosol	13.76	28.73
Bra026081.1-P	Field mustard	nucleus	19.31	18.77

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra039620	EnsemblPlants:Bra039620.1	EnsemblPlants:Bra039620.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886
GO:GO:0008150	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620	GO:GO:0016020
InterPro:IPR001810	InterPro:IPR025659	UniProt:M4FEU8	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002541111	SEG:seg	:

Description

AT2G18280 (E=9e-120) AtTLP2 | AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA07:-:1538887..1540246

Molecular Weight (calculated)

42187.7 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.321

Length

378 amino acids

Sequence
(BLAST)

001: MSFKSILRDL KEVRDGLGGI SKRGWSKSSH IAPDHTMTPS ENIPQSPWAS LPPELLHEII RRVEESETAW PARAAVVSCA SVCKSWRGIT METVRVPEQC
101: GKLTFPISLK QPGPRDLPIQ CFIKRNRATA TYILYYGLMP SEMENDKLLL AARRVRRATC TDFVISLSAK NFSRRSSTYV GKLRSGFLGT KFTIYDNQTG
201: SSTAQAQPKQ ASPKLPATSY TSGSITYELN VLRTRGPRRM HCVMDSIPLS SVISEPSLVK EEVSSGETSS TDKENISPSL LDQPLVLKNK SPRWHEQLQC
301: WCLNFKGRVT VASVKNFQLV ADIDPSLDAL PEEHERVILQ FGKIGKDIFT MDYRYPLSAF QAFAICISSF DTKPACEG

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.