Factsheet for Solyc02g062670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040088	Potato	cytosol	96.35	96.59
Solyc04g071750.2.1	Tomato	cytosol	80.05	82.25
Solyc03g033980.2.1	Tomato	cytosol	80.78	81.77
Solyc02g085130.2.1	Tomato	cytosol	77.86	77.86
VIT_04s0023g01950.t01	Wine grape	cytosol	76.16	75.79
GSMUA_Achr2P23080_001	Banana	cytosol	25.06	75.74
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	32.36	74.72
KRH76777	Soybean	cytosol	72.02	71.33
KRH28692	Soybean	cytosol	71.78	71.26
KRH69894	Soybean	cytosol	71.05	70.53
KRH08239	Soybean	cytosol	69.83	69.32
GSMUA_Achr6P09030_001	Banana	cytosol	59.85	67.96
CDY46301	Canola	cytosol	60.1	65.34
Bra039620.1-P	Field mustard	cytosol	60.1	65.34
CDY25159	Canola	cytosol	59.37	65.07
TraesCS6B01G300200.1	Wheat	cytosol	65.94	63.62
TraesCS6D01G252800.1	Wheat	cytosol	65.45	63.29
HORVU6Hr1G068970.3	Barley	cytosol	65.45	63.0
AT2G18280.2	Thale cress	cytosol	60.34	62.94
TraesCS6A01G272800.1	Wheat	cytosol	65.69	62.94
EES07397	Sorghum	cytosol	65.45	62.12
Zm00001d051568_P001	Maize	cytosol	65.45	61.7
GSMUA_Achr2P22940_001	Banana	cytosol	54.99	61.58
Zm00001d017773_P001	Maize	cytosol	65.21	61.33
CDY65687	Canola	cytosol, mitochondrion	53.04	58.29
Bra040862.1-P	Field mustard	mitochondrion, nucleus	55.47	57.58
CDY17028	Canola	mitochondrion, nucleus	55.23	57.47
Bra015624.1-P	Field mustard	cytosol, mitochondrion	56.2	57.32
Solyc10g046970.1.1	Tomato	mitochondrion	58.15	56.1
AT1G47270.1	Thale cress	nucleus	55.72	55.45
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	39.9	55.22
Solyc01g104670.2.1	Tomato	cytosol	56.2	54.1
Solyc04g071440.2.1	Tomato	mitochondrion	54.5	52.58
Solyc09g074510.2.1	Tomato	cytosol	50.61	52.53
CDY10578	Canola	mitochondrion	5.35	52.38
Solyc07g062390.2.1	Tomato	mitochondrion	44.04	46.89
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	20.92	43.65
Solyc01g067680.2.1	Tomato	cytosol	25.55	42.17
GSMUA_Achr10P...	Banana	nucleus	20.19	39.52
CDY06747	Canola	cytosol, mitochondrion	53.28	37.89
Zm00001d033948_P004	Maize	cytosol	15.82	35.91
Solyc03g117730.2.1	Tomato	cytosol	21.41	21.67

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659
UniProt:K4B6F5	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517
PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc02g062670.2	EnsemblPlants:Solyc02g062670.2.1	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002768286	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:34399568..34402002

Molecular Weight (calculated)

46254.0 Da

IEP (calculated)

9.298

GRAVY (calculated)

-0.405

Length

411 amino acids

Sequence
(BLAST)

001: MSFKSIVREL REMRDGIGNI SRRRVEGRHW CNRTRSHIAP DVAPFEPSEQ GQWANLPPEL LFDIISRVEE SETTWPARNV VISCASVCKS WREVTKEIVR
101: TPEECGRITF PISLKQPGPR ESPIHCFIKR DSDNSVYRLY FGFTPSEDES DKLLLAARRI RRATSTDFVI TLVADDFSRA SNTYLGKLRS NFLGTKFTIY
201: DNQPPSDASI QERSQRSRRF CTKQVSVTGP ACNYSIANIS YELNVLRTRG PRRMHCAMHS IPFSSIQEGG SAPTPTSFPR SFGEKASPPS VSDSKETAKD
301: VSSPSISSSA VALPLRESLV LKNKAPRWHE QLQCWCLNFR GRVTVASVKN FQLVAAVAPP HSIPAAEQEK VILQFGKIGK DIFTMDYRYP LSAYQAFAIC
401: LSSFDTKPVC E

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.