Factsheet for Zm00001d051568_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07397	Sorghum	cytosol	94.04	94.69
Zm00001d017773_P001	Maize	cytosol	93.12	92.91
Os02t0705300-01	Rice	cytosol	85.55	87.15
TraesCS6B01G300200.1	Wheat	cytosol	84.17	86.15
TraesCS6D01G252800.1	Wheat	cytosol	83.72	85.88
HORVU6Hr1G068970.3	Barley	cytosol	83.72	85.48
TraesCS6A01G272800.1	Wheat	cytosol	83.49	84.85
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	32.57	79.78
GSMUA_Achr2P23080_001	Banana	cytosol	24.77	79.41
GSMUA_Achr6P09030_001	Banana	cytosol	60.78	73.2
VIT_04s0023g01950.t01	Wine grape	cytosol	66.28	69.98
KRH76777	Soybean	cytosol	66.51	69.88
KRH28692	Soybean	cytosol	65.83	69.32
Solyc04g071750.2.1	Tomato	cytosol	62.39	68.0
GSMUA_Achr2P22940_001	Banana	cytosol	57.11	67.85
PGSC0003DMT400016310	Potato	cytosol	62.39	67.83
Solyc03g033980.2.1	Tomato	cytosol	62.61	67.24
PGSC0003DMT400058090	Potato	cytosol	62.39	67.0
PGSC0003DMT400009280	Potato	cytosol	62.16	66.58
Solyc02g085130.2.1	Tomato	cytosol	62.39	66.18
VIT_18s0001g12660.t01	Wine grape	cytosol	62.61	65.62
PGSC0003DMT400040088	Potato	cytosol	61.7	65.61
KRH08239	Soybean	cytosol	62.16	65.46
KRH69894	Soybean	cytosol	62.16	65.46
Solyc02g062670.2.1	Tomato	cytosol	61.7	65.45
KRH15179	Soybean	cytosol	60.55	62.41
CDY25159	Canola	cytosol	53.44	62.13
CDY46301	Canola	cytosol	53.21	61.38
Bra039620.1-P	Field mustard	cytosol	53.21	61.38
AT2G18280.2	Thale cress	cytosol	54.59	60.41
CDY10578	Canola	mitochondrion	5.73	59.52
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	40.37	59.26
KRH05837	Soybean	mitochondrion	61.7	59.25
CDY65687	Canola	cytosol, mitochondrion	49.54	57.75
AT1G47270.1	Thale cress	nucleus	54.13	57.14
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.83	57.07
CDY17028	Canola	mitochondrion, nucleus	51.38	56.71
Bra015624.1-P	Field mustard	cytosol, mitochondrion	52.06	56.33
Zm00001d029165_P004	Maize	cytosol, plastid	50.69	55.11
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	22.94	50.76
Zm00001d011578_P003	Maize	nucleus	41.28	50.28
Zm00001d053179_P001	Maize	cytosol	51.38	50.0
Zm00001d002896_P001	Maize	cytosol	49.08	48.64
Zm00001d038691_P001	Maize	mitochondrion	40.83	48.5
Zm00001d052765_P002	Maize	mitochondrion	48.62	46.49
Zm00001d042724_P002	Maize	mitochondrion	50.69	46.04
Zm00001d043895_P003	Maize	cytosol	39.91	46.03
Zm00001d007106_P001	Maize	cytosol	32.57	45.51
Zm00001d038310_P003	Maize	mitochondrion	51.83	45.38
GSMUA_Achr10P...	Banana	nucleus	21.56	44.76
Zm00001d033948_P004	Maize	cytosol	16.28	39.23
CDY06747	Canola	cytosol, mitochondrion	50.23	37.89
Zm00001d015485_P001	Maize	plastid	20.41	22.14
Zm00001d029092_P001	Maize	mitochondrion	16.51	20.81
Zm00001d047019_P001	Maize	mitochondrion	16.51	20.81
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	10.78	17.15

Protein Annotations

EntrezGene:100191954	MapMan:15.5.21	Gene3D:3.20.90.10	ProteinID:AQK54581.1	UniProt:B4FAS5	EMBL:BT034213
EMBL:BT067675	ncoils:Coil	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI00017B62A3	EnsemblPlantsGene:Zm00001d051568	EnsemblPlants:Zm00001d051568_P001	EnsemblPlants:Zm00001d051568_T001	SEG:seg

Description

TUB-transcription factor 6Tubby-like F-box protein 6

Coordinates

chr4:+:162975759..162979667

Molecular Weight (calculated)

48280.0 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.389

Length

436 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGSGSDG RAFHGRSGSR HSWPSLWAEQ QQSHRQGQGL GPGPEGPHHQ HQGRWANLPP ELLLDVIQRV ESSEATWPAR
101: RQVVACAAIC RSWREVTKEV VKTLEECGRI TFPISLKQPG PREMPVQCFV RRERATSTYL LYLGLSPSMN VEKDKLLLAA RKVRRATRTY FVISLVSDDF
201: SHSSSTYVGK LKPNFLGTKF TIFDSQPPPD AVVLPNNKTS KRQSKQVSPR LPLGNYNVAT VTYELTVLRN RGPRRMQCTM HSIPAECIQE GGKAPTPTGA
301: IQSLDEPVSS TLPSAKGKEV AVEFSSTSLS ADLSGPACVN GTPLVLKNKA PRWHEQLQCW CLNFRGRVTV ASVKNFQLVA SVDPSLNIPA AEQEKVILQF
401: GKIGKDIFTM DYRYPLSAFQ AFAICLTSFD TKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.