Factsheet for Zm00001d029165_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39376	Sorghum	cytosol, plastid	94.76	95.24
Os03t0351400-01	Rice	cytosol	66.08	89.53
TraesCS4B01G166400.1	Wheat	cytosol, plastid	84.79	84.16
TraesCS4D01G164200.1	Wheat	cytosol, plastid	84.54	83.91
TraesCS4A01G140800.1	Wheat	cytosol, plastid	83.79	83.58
VIT_01s0010g01060.t01	Wine grape	mitochondrion	10.47	77.78
GSMUA_Achr1P11290_001	Banana	cytosol	73.82	72.91
VIT_07s0104g01290.t01	Wine grape	cytosol	72.82	72.1
PGSC0003DMT400029513	Potato	cytosol	70.82	71.72
GSMUA_Achr3P17440_001	Banana	cytosol	71.82	71.46
Solyc09g074510.2.1	Tomato	cytosol	70.07	70.96
AT2G47900.3	Thale cress	cytosol	70.32	69.29
Bra021446.1-P	Field mustard	cytosol	69.08	68.91
CDY55525	Canola	cytosol	68.83	68.66
CDY27467	Canola	cytosol	67.83	68.51
KRH71532	Soybean	cytosol	67.58	67.75
Zm00001d007106_P001	Maize	cytosol	45.64	58.65
Zm00001d002896_P001	Maize	cytosol	56.36	51.36
Zm00001d011578_P003	Maize	nucleus	45.39	50.84
Zm00001d017773_P001	Maize	cytosol	55.36	50.8
Zm00001d051568_P001	Maize	cytosol	55.11	50.69
Zm00001d038691_P001	Maize	mitochondrion	45.89	50.14
Zm00001d053179_P001	Maize	cytosol	55.11	49.33
Zm00001d038310_P003	Maize	mitochondrion	59.85	48.19
Zm00001d052765_P002	Maize	mitochondrion	54.36	47.81
Zm00001d043895_P003	Maize	cytosol	44.64	47.35
Zm00001d042724_P002	Maize	mitochondrion	56.11	46.88
VIT_01s0010g01050.t01	Wine grape	cytosol	15.71	46.67
VIT_00s0426g00050.t01	Wine grape	extracellular	17.71	44.65
Zm00001d047019_P001	Maize	mitochondrion	25.19	29.19
Zm00001d029092_P001	Maize	mitochondrion	25.19	29.19
Zm00001d033948_P004	Maize	cytosol	12.47	27.62
Zm00001d015485_P001	Maize	plastid	18.95	18.91
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.22	17.88

Protein Annotations

EntrezGene:100282475	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A1D6K358	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	ProteinID:ONL98088.1	ProteinID:ONL98089.1
ProteinID:ONL98090.1	ProteinID:ONL98091.1	ProteinID:ONL98092.1	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI00022147CD	EnsemblPlantsGene:Zm00001d029165	EnsemblPlants:Zm00001d029165_P004	EnsemblPlants:Zm00001d029165_T004
SEG:seg	:	:	:	:	:

Description

TUB-transcription factor 11Tubby protein

Coordinates

chr1:-:60879662..60888390

Molecular Weight (calculated)

44562.2 Da

IEP (calculated)

9.997

GRAVY (calculated)

-0.393

Length

401 amino acids

Sequence
(BLAST)

001: MSFRSLIQDM KDEFGSISRH SLRSRSHRSA GNAARAAAAG PSEAMDQSCW SQLPPELLRE VLVRIEASES WWPARKNVVS GAGVCRTWRG IMKEAVRVPE
101: VSGKLTFPIS LKQPGPRDGT LKCFIRRNRT TQTYYLYIGL TEALADDGKF LLAARKCRKP TCTDYLISLD KVDMSKGSST YIGKLRSNFL GTKFTVYDAH
201: PPYDGAAVSK SRSARVVGLK QVSPRVPAGN YPVSHISYEL NVLGSRGPRR MNCVMDSIPA SAVKEGGKTP TQTEFPLSSL DSFPSFPFFR SKSARIDSST
301: SQSSSQREDR LVLKNKSPRW HEQLQCWCLN FRGRVTVASV KNFQLVASED NGPENQESDK VILQFGKIGK DLFTMDYGYP ISAFQAFAIC LSSFDTKIAC
401: E

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.