Factsheet for VIT_01s0010g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	87.04	79.66
Os03t0351400-01	Rice	cytosol	79.63	14.53
VIT_05s0020g01930.t01	Wine grape	cytosol	83.33	12.86
VIT_07s0104g01290.t01	Wine grape	cytosol	96.3	12.84
CDY27467	Canola	cytosol	87.04	11.84
Bra021446.1-P	Field mustard	cytosol	87.04	11.69
CDY55525	Canola	cytosol	87.04	11.69
AT2G47900.3	Thale cress	cytosol	87.04	11.55
TraesCS4B01G166400.1	Wheat	cytosol, plastid	85.19	11.39
TraesCS4D01G164200.1	Wheat	cytosol, plastid	85.19	11.39
PGSC0003DMT400029513	Potato	cytosol	83.33	11.36
Solyc09g074510.2.1	Tomato	cytosol	83.33	11.36
GSMUA_Achr1P11290_001	Banana	cytosol	85.19	11.33
TraesCS4A01G140800.1	Wheat	cytosol, plastid	83.33	11.19
KRH71532	Soybean	cytosol	77.78	10.5
Zm00001d029165_P004	Maize	cytosol, plastid	77.78	10.47
GSMUA_Achr3P17440_001	Banana	cytosol	77.78	10.42
KXG39376	Sorghum	cytosol, plastid	75.93	10.28
Os07t0667000-01	Rice	cytosol	75.93	10.1
TraesCS2D01G122900.1	Wheat	cytosol	68.52	9.89
TraesCS2A01G120900.1	Wheat	mitochondrion	68.52	9.84
TraesCS2B01G141800.1	Wheat	cytosol	68.52	9.79
VIT_18s0001g12660.t01	Wine grape	cytosol	74.07	9.62
EER97690	Sorghum	cytosol	70.37	9.52
VIT_04s0023g01950.t01	Wine grape	cytosol	70.37	9.2
VIT_12s0055g00460.t01	Wine grape	mitochondrion	72.22	9.2
VIT_19s0014g01250.t01	Wine grape	mitochondrion	66.67	8.98
VIT_18s0072g00630.t01	Wine grape	cytosol	66.67	8.47
Zm00001d007106_P001	Maize	cytosol	48.15	8.33
VIT_00s0426g00050.t01	Wine grape	extracellular	12.96	4.4
VIT_09s0018g01630.t01	Wine grape	cytosol	29.63	4.24
VIT_01s0010g01050.t01	Wine grape	cytosol	1.85	0.74
Zm00001d029092_P001	Maize	mitochondrion	0.0	0.0
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	0.0	0.0
Zm00001d047019_P001	Maize	mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_01s0010g01060	EMBL:FN595754	EnsemblPlants:VIT_01s0010g01060.t01	EnsemblPlantsGene:VIT_01s0010g01060	Gene3D:3.20.90.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	PFAM:PF01167	PRINTS:PR01573	ProteinID:CCB51170	ProteinID:CCB51170.1
SUPFAM:SSF54518	UniParc:UPI00021092D8	UniProt:F6HGG9	MapMan:15.5.21	:	:

Description

No Description!

Coordinates

chr1:+:16612824..16612997

Molecular Weight (calculated)

6037.3 Da

IEP (calculated)

8.247

GRAVY (calculated)

-0.028

Length

54 amino acids

Sequence
(BLAST)

1: MLVLKNKAPK WHEQLQCWCL NFSGRVTVAS VKNFQLVASA ENGVAGQEHE NVIL

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.