Factsheet for TraesCS4A01G140800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G166400.1	Wheat	cytosol, plastid	97.76	97.28
TraesCS4D01G164200.1	Wheat	cytosol, plastid	97.51	97.03
Os03t0351400-01	Rice	cytosol	66.42	90.2
KXG39376	Sorghum	cytosol, plastid	85.32	85.96
Zm00001d029165_P004	Maize	cytosol, plastid	83.58	83.79
VIT_01s0010g01060.t01	Wine grape	mitochondrion	11.19	83.33
GSMUA_Achr1P11290_001	Banana	cytosol	72.14	71.43
VIT_07s0104g01290.t01	Wine grape	cytosol	71.14	70.62
GSMUA_Achr3P17440_001	Banana	cytosol	70.65	70.47
PGSC0003DMT400029513	Potato	cytosol	69.4	70.45
Solyc09g074510.2.1	Tomato	cytosol	68.66	69.7
Bra021446.1-P	Field mustard	cytosol	67.91	67.91
CDY55525	Canola	cytosol	67.91	67.91
TraesCS2A01G120900.1	Wheat	mitochondrion	63.43	67.82
AT2G47900.3	Thale cress	cytosol	68.41	67.57
CDY27467	Canola	cytosol	66.67	67.51
KRH71532	Soybean	cytosol	65.67	66.0
TraesCS3A01G270800.1	Wheat	cytosol	44.78	50.7
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	54.23	49.55
TraesCS5A01G124100.1	Wheat	cytosol	53.73	49.2
TraesCS6A01G272800.1	Wheat	cytosol	52.24	48.95
TraesCS1A01G273100.1	Wheat	mitochondrion	55.22	48.68
TraesCS1A01G333900.1	Wheat	mitochondrion	45.02	48.53
TraesCS7A01G326400.1	Wheat	golgi	54.48	48.03
TraesCS3A01G378300.1	Wheat	mitochondrion	52.99	47.44
TraesCS2A01G574000.1	Wheat	golgi	53.23	45.44
VIT_01s0010g01050.t01	Wine grape	cytosol	14.43	42.96
VIT_00s0426g00050.t01	Wine grape	extracellular	16.92	42.77
TraesCS6A01G149400.1	Wheat	plastid	16.17	16.25

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383
EnsemblPlantsGene:TraesCS4A01G140800	EnsemblPlants:TraesCS4A01G140800.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	SEG:seg

Description

No Description!

Coordinates

chr4A:+:217650946..217655088

Molecular Weight (calculated)

44499.5 Da

IEP (calculated)

9.718

GRAVY (calculated)

-0.284

Length

402 amino acids

Sequence
(BLAST)

001: MSFRSLIQDM KDEFGNISRH GLRSSRSHRT AAGPGAPRVV SVGLADALEG TCWAQLPPEL LREVLVRIDD SQGCWPSRRD VVACAGVCRA WRGIMKEVVR
101: VPEASAKLTF PISLKQPGPK DGTLKCFIRR NRTTQTYYLY IGLTEALADD GKFLLAARKC RKPTYTDYLI YLDMGDMSKG SSTYIGKLRS NFLGTKFTVY
201: DAHPPYDGAV VSKSRSARVI GLNQVSPRVP AGNYPVSHIS YELNVLGSRG PRRMNCVMSS IPASAVEEGG KAPTQTEFPL GNLDSFPSIP FFRSKSARID
301: SAPAQAQDKE KLVLKSKSPR WHEQLQCWCL NFRGRVTVAS VKNFQLVASD ENGAAGQEHD KVILQFGKIG KDLFTMDYRY PISAFQSFAI CLSSFDTKIA
401: CE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.