Factsheet for TraesCS5A01G124100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G123800.1	Wheat	golgi	99.09	99.09
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	98.86	98.86
HORVU5Hr1G040000.2	Barley	cytosol	94.76	94.76
Os12t0163400-01	Rice	cytosol	87.7	86.52
KXG23034	Sorghum	cytosol, mitochondrion	84.51	84.9
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	78.59	78.41
VIT_18s0072g00630.t01	Wine grape	cytosol	71.98	74.35
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	71.75	73.6
Solyc04g071440.2.1	Tomato	mitochondrion	71.07	73.24
PGSC0003DMT400061933	Potato	cytosol	70.84	73.0
KRH10476	Soybean	cytosol, mitochondrion	70.84	72.83
VIT_12s0055g00460.t01	Wine grape	mitochondrion	69.93	72.41
KRH43964	Soybean	cytosol, mitochondrion	70.39	72.37
PGSC0003DMT400076537	Potato	cytosol	69.7	71.66
KRH35144	Soybean	cytosol, mitochondrion	70.16	71.63
KRG91652	Soybean	cytosol, mitochondrion	70.16	71.63
KRH08694	Soybean	mitochondrion	69.02	71.46
KRH70303	Soybean	cytosol	69.02	71.46
Solyc01g104670.2.1	Tomato	cytosol	69.48	71.43
Solyc10g046970.1.1	Tomato	mitochondrion	68.34	70.42
PGSC0003DMT400002858	Potato	mitochondrion	67.65	69.72
TraesCS1A01G273100.1	Wheat	mitochondrion	71.75	69.08
TraesCS3A01G378300.1	Wheat	mitochondrion	68.56	67.04
CDY45959	Canola	cytosol	64.69	66.2
CDX84977	Canola	cytosol	63.1	65.95
CDY13570	Canola	cytosol	63.78	65.88
Bra024763.1-P	Field mustard	cytosol	64.92	65.07
CDY36119	Canola	cytosol	62.41	64.93
CDY42119	Canola	cytosol	64.46	64.76
Bra040803.1-P	Field mustard	cytosol	65.83	64.65
AT1G25280.1	Thale cress	cytosol	65.38	64.49
CDY51990	Canola	cytosol	61.73	64.07
Bra010985.1-P	Field mustard	cytosol	64.01	64.01
CDY66464	Canola	cytosol	62.19	63.64
CDY72036	Canola	cytosol	64.01	63.43
Bra012486.1-P	Field mustard	cytosol	64.01	63.43
AT1G76900.1	Thale cress	cytosol	65.6	63.3
TraesCS7A01G326400.1	Wheat	golgi	64.01	61.62
CDY65845	Canola	cytosol, mitochondrion	63.1	61.56
CDX87562	Canola	cytosol, mitochondrion	62.87	61.2
AT1G43640.1	Thale cress	cytosol	59.45	60.84
Bra015711.1-P	Field mustard	cytosol, mitochondrion	64.01	60.43
TraesCS2A01G574000.1	Wheat	golgi	61.96	57.75
GSMUA_Achr11P...	Banana	cytosol	54.44	57.59
TraesCS4A01G140800.1	Wheat	cytosol, plastid	49.2	53.73
TraesCS2A01G120900.1	Wheat	mitochondrion	45.79	53.46
TraesCS6A01G272800.1	Wheat	cytosol	52.16	53.38
TraesCS3A01G270800.1	Wheat	cytosol	39.64	49.01
TraesCS1A01G333900.1	Wheat	mitochondrion	41.0	48.26
TraesCS6A01G149400.1	Wheat	plastid	17.08	18.75

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS5A01G124100	EnsemblPlants:TraesCS5A01G124100.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:271047672..271050381

Molecular Weight (calculated)

48907.3 Da

IEP (calculated)

9.315

GRAVY (calculated)

-0.355

Length

439 amino acids

Sequence
(BLAST)

001: MSFRSIVHDV RDGFGSLSRR GFEVRFLGHR RGKSHSAVHE LHDPAPVIQS SCWANLPPEL LHDVIERLEA SEATWPSRKH VVACAAVCRT WREMCQEIVK
101: NPEFCGKITF PVSLKQPGPR DGTIQCFIKR DKSTQTYYLY LCLTSAVVAE NGKFLLLAKR HSRPTCTEYT IFMNTDNTSR SSNMYIGKLR SNLLGTKFVI
201: YDTQHPCNIP NVSQSGKTSR RFYSRKVSPK ASSSTYSIAQ VSYELNVLGT RGPRRMNCVM NSIPASSLEA GGTVLCQPDS AVAHSLDESF GSISFSKSSI
301: RDRSIRFSST RFSGISIGGS RNGGQALGDN DECKEWPLTL RNKAPRWHDQ LQCWCLNFKG RVTVASVKNF QLVAATESTA EAPTPSQPAP PPPSEHDKVI
401: LQFGKVAKDM FTMDYRYPLS AFQAFAICLS SFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.