Factsheet for TraesCS3A01G378300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G371600.1	Wheat	mitochondrion	99.78	99.78
TraesCS3B01G411000.1	Wheat	mitochondrion	99.55	99.33
HORVU3Hr1G083290.1	Barley	mitochondrion	98.89	98.89
Os01t0866800-01	Rice	mitochondrion	85.08	85.27
Zm00001d042724_P002	Maize	mitochondrion	85.75	80.21
EES01812	Sorghum	mitochondrion	85.52	80.0
TraesCS1A01G273100.1	Wheat	mitochondrion	78.62	77.41
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	49.44	72.08
TraesCS5A01G124100.1	Wheat	cytosol	67.04	68.56
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	65.92	67.27
TraesCS7A01G326400.1	Wheat	golgi	66.15	65.13
TraesCS2A01G574000.1	Wheat	golgi	63.47	60.51
TraesCS4A01G140800.1	Wheat	cytosol, plastid	47.44	52.99
TraesCS2A01G120900.1	Wheat	mitochondrion	42.76	51.06
TraesCS3A01G270800.1	Wheat	cytosol	40.09	50.7
TraesCS6A01G272800.1	Wheat	cytosol	47.66	49.88
TraesCS1A01G333900.1	Wheat	mitochondrion	40.31	48.53
TraesCS6A01G149400.1	Wheat	plastid	14.92	16.75

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS3A01G378300	EnsemblPlants:TraesCS3A01G378300.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:627863341..627865189

Molecular Weight (calculated)

49950.8 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.344

Length

449 amino acids

Sequence
(BLAST)

001: MSFRSIARDV RDGFGSLSRR SFDVTIASLY GLTGHHKGKA QSSLDDFLDP APVIQESRWA SLPPELLQDI IRRLEADEST WPSRKHVVCF AAVCKTWREM
101: CKEIVLSPEF SGKLTFRVSL KQPGPRDGMI QCFIKRNKSK STYQLYLCLT NVVTAETGKF LLSAKRNRKT SCTEYAISMD SANTSRSNRT YIGKLRSNFL
201: GTKFLIYDTQ PPYNGAVVPP VGRSSRRFNS TRVSPKVPAV SYNIAQVTYE LNVLGTRGPR RMRCIMHSIP ASSVEPGGVV PGQPEQIVPR ALGDSFRSIT
301: SFSQSFRSSA TFSRSIMDQS MDFNSARFSE ISGGGVTDGD GEGEVKERPL VLRNKPPRWH EQLQCWCLNF RGRVTIASVK NFQLTAASNP PPAGAPTPSQ
401: PGPVDPEKVI LQFGKVARDM FTMDYRYPLS AFQAFAICLS SFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.