Factsheet for HORVU3Hr1G083290.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G371600.1	Wheat	mitochondrion	98.89	98.89
TraesCS3A01G378300.1	Wheat	mitochondrion	98.89	98.89
TraesCS3B01G411000.1	Wheat	mitochondrion	98.44	98.22
Os01t0866800-01	Rice	mitochondrion	85.08	85.27
Zm00001d042724_P002	Maize	mitochondrion	85.97	80.42
EES01812	Sorghum	mitochondrion	85.75	80.21
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	78.62	78.1
HORVU5Hr1G023650.1	Barley	plastid	41.65	77.59
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	49.44	72.08
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	67.04	68.41
HORVU5Hr1G040000.2	Barley	cytosol	66.15	67.65
HORVU3Hr1G061930.1	Barley	cytosol	40.31	50.84
HORVU6Hr1G068970.3	Barley	cytosol	47.22	49.65
HORVU1Hr1G076900.1	Barley	cytosol	39.64	46.23
HORVU2Hr1G124880.1	Barley	plastid	63.92	46.22
HORVU0Hr1G001350.2	Barley	cytosol	23.83	28.69
HORVU6Hr1G029710.3	Barley	plastid	17.37	19.75

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EMBL:AK369524	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F2E053	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU3Hr1G083290	EnsemblPlants:HORVU3Hr1G083290.1
InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002007806	SEG:seg	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F2E053]

Coordinates

chrchr3H:-:602734953..602738326

Molecular Weight (calculated)

49954.8 Da

IEP (calculated)

10.020

GRAVY (calculated)

-0.337

Length

449 amino acids

Sequence
(BLAST)

001: MSFRSIARDV RDGFGSLSRR SFDVTIASLY GLTGHHKGKA QSSLDDFLDP APVIQESRWA SLPPELLQDI IRRLEADEST WPSRKHVVCF AAVCKTWREM
101: CKEIVLSPEF SGKLTFRVSL KQPGPRDGMI QCFIKRNKSK STYQLYLCLT NVVTAETGKF LLSAKRNRKT SCTEYAISMD SANTSRSNRT YIGKLRSNFL
201: GTKFLIYDTQ PPYNGAVVPP VGRSSRRFNS TKVSPKVPAV SYNIAQVTYE LNVLGTRGPR RMRCIMHSIP ASSVEPGGVV PGQPEQIVPR ALGDSFRSIT
301: SFSQSFRSSA TFSRSIMDQS MDFNSARFSE ISGGGLTDCD GDGEVKERPL VLRNKPPRWH EQLQCWCLNF RGRVTIASVK NFQLTAASNP PPAGAPTPSQ
401: PGPVDPDKVI LQFGKVARDM FTMDYRYPLS AFQAFAICLS SFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.