Factsheet for HORVU1Hr1G074940.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G282900.1	Wheat	mitochondrion	96.68	96.26
TraesCS1D01G273200.1	Wheat	mitochondrion	96.02	95.59
TraesCS1A01G273100.1	Wheat	mitochondrion	96.02	95.18
Os05t0437900-01	Rice	mitochondrion	87.39	88.76
EES19596	Sorghum	mitochondrion	87.39	87.78
HORVU5Hr1G023650.1	Barley	plastid	42.7	80.08
HORVU3Hr1G083290.1	Barley	mitochondrion	78.1	78.62
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	52.65	77.27
Zm00001d038310_P003	Maize	mitochondrion	80.97	73.49
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	70.13	72.05
HORVU5Hr1G040000.2	Barley	cytosol	69.25	71.3
HORVU6Hr1G068970.3	Barley	cytosol	50.22	53.16
HORVU3Hr1G061930.1	Barley	cytosol	41.59	52.81
HORVU2Hr1G124880.1	Barley	plastid	66.15	48.15
HORVU1Hr1G076900.1	Barley	cytosol	39.82	46.75
HORVU0Hr1G001350.2	Barley	cytosol	23.67	28.69
HORVU6Hr1G029710.3	Barley	plastid	17.7	20.25

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G074940	EnsemblPlants:HORVU1Hr1G074940.3	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0YFH9
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39
SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000295FD7F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:509508851..509513968

Molecular Weight (calculated)

50307.2 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.385

Length

452 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGIGSLSRR SFEVTISGLS GLTGHHRGKH QSTVHELRDA DLIVQESRWA SLPPELLRDV VRRLEASEST WPSRKHVVSC AAVCKAWREM
101: CREIVTSPEF CGKLTFPVSL KQPGPRDGMI QCFIKRDKSK STYHLYLCLS NAVLAENGKF LLSAKRNRKT TCTEYVISMD AENISRSSST YIGKLRSNFL
201: GTKFVVYDTQ PPYNGAIVPS VGRSSRRFNS KKVSPKVPSG SYNIAQVSYE LNVLGTRGPR RMNCIMHSIP ASSVEPGGTV PGQPDQIMAR ALEDSFRSMS
301: SFSKSSIMDR STDFSSSRYF SSSRFLSDIA GGAISRDEDG ENKERPLVLR NKVPRWHEQL QCWCLNFRGR VTIASVKNFQ LIAAPSQPPP APAGAPTPTP
401: SQPAPAPEQD KIILQFGKVS KDMFTMDYRY PLSAFQAFAM CLSSFDTKLA CE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.