Factsheet for GSMUA_Achr9P29600_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P22480_001	Banana	cytosol	76.3	67.53
GSMUA_Achr8P07950_001	Banana	mitochondrion	78.57	63.68
GSMUA_Achr8P32840_001	Banana	mitochondrion	82.14	61.56
EES19596	Sorghum	mitochondrion	80.19	54.89
Os05t0437900-01	Rice	mitochondrion	78.9	54.61
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	74.35	53.5
TraesCS1D01G273200.1	Wheat	mitochondrion	77.92	52.86
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	77.27	52.65
TraesCS1A01G273100.1	Wheat	mitochondrion	77.92	52.63
TraesCS1B01G282900.1	Wheat	mitochondrion	76.95	52.2
Os01t0866800-01	Rice	mitochondrion	73.05	50.22
TraesCS3A01G378300.1	Wheat	mitochondrion	72.08	49.44
HORVU3Hr1G083290.1	Barley	mitochondrion	72.08	49.44
TraesCS3D01G371600.1	Wheat	mitochondrion	72.08	49.44
TraesCS3B01G411000.1	Wheat	mitochondrion	72.08	49.33
EES01812	Sorghum	mitochondrion	75.97	48.75
Zm00001d042724_P002	Maize	mitochondrion	75.32	48.33
Zm00001d038310_P003	Maize	mitochondrion	75.65	46.79
GSMUA_Achr11P...	Banana	cytosol	62.34	46.27
GSMUA_Achr1P11290_001	Banana	cytosol	57.47	43.6
GSMUA_Achr3P17440_001	Banana	cytosol	56.49	43.18
GSMUA_Achr6P09030_001	Banana	cytosol	49.68	42.27
GSMUA_Achr7P25250_001	Banana	cytosol	43.51	42.14
GSMUA_Achr4P01150_001	Banana	cytosol	42.53	41.07
GSMUA_Achr3P31460_001	Banana	cytosol	42.21	40.62
GSMUA_Achr2P23080_001	Banana	cytosol	17.21	38.97
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	22.4	38.76
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	24.35	38.07
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	36.36	37.71
GSMUA_Achr2P22940_001	Banana	cytosol	43.51	36.51
GSMUA_Achr10P...	Banana	mitochondrion	43.83	36.49
GSMUA_Achr10P...	Banana	nucleus	24.68	36.19
GSMUA_Achr4P10540_001	Banana	mitochondrion	44.81	35.94
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	32.79	34.24
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.23	13.62

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G29600_001	EnsemblPlants:GSMUA_Achr9P29600_001	EnsemblPlants:GSMUA_Achr9T29600_001	InterPro:IPR001810	InterPro:IPR025659
UniProt:M0U4L7	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF31	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000295C161	SEG:seg	:	:	:

Description

Tubby-like F-box protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr9G29600_001]

Coordinates

chr9:-:33227965..33232674

Molecular Weight (calculated)

34699.5 Da

IEP (calculated)

9.925

GRAVY (calculated)

-0.447

Length

308 amino acids

Sequence
(BLAST)

001: MSFRRIVRDV RDSFGSLSRR SFEVRLSGVL GHHKGKSDSS ENEPHDFSQI TQQSHWATLP PELLRDVIRR LEENEATWPS RKHVVDCAGV CRAWREMCKE
101: IVRSPEFCGK LTFPISLKQP GPRDGMIQCF IKRDKSKLTY HLYLCLSPAV LVENGKFLLS AKRNPRTTCT EYVISTDAGN ISRSSSTYVG KLRSNFIGTK
201: FRIYDTQPPY NGAALCPPGR TSRSSRFSAT SAGGAQEGFE ATTDTKERPL VLRNKPPRWH EQLQCWCLNF RGRVTIASVK NFQLIAATQP AAAFAICLSS
301: FDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.