CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042724_P002	Maize	mitochondrion	96.46	96.46
Os01t0866800-01	Rice	mitochondrion	83.12	89.06
HORVU3Hr1G083290.1	Barley	mitochondrion	80.21	85.75
TraesCS3D01G371600.1	Wheat	mitochondrion	80.0	85.52
TraesCS3A01G378300.1	Wheat	mitochondrion	80.0	85.52
TraesCS3B01G411000.1	Wheat	mitochondrion	80.0	85.33
EES19596	Sorghum	mitochondrion	75.21	80.22
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	48.75	75.97
KXG23034	Sorghum	cytosol, mitochondrion	64.17	70.48
KXG24166	Sorghum	cytosol	61.25	65.62
OQU82627	Sorghum	cytosol	61.04	64.68
EES08030	Sorghum	cytosol, mitochondrion	61.25	64.47
KXG39376	Sorghum	cytosol, plastid	47.92	57.64
EES03425	Sorghum	plastid	38.75	51.67
EES07397	Sorghum	cytosol	46.25	51.27
EER97690	Sorghum	cytosol	39.79	47.87
EES18499	Sorghum	mitochondrion	36.46	47.04
OQU78419	Sorghum	cytosol	34.79	44.3
KXG29622	Sorghum	plastid	16.04	18.16

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:8060975	UniProt:C5XQM9	EnsemblPlants:EES01812	ProteinID:EES01812
ProteinID:EES01812.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39	EnsemblPlantsGene:SORBI_3003G368000
SUPFAM:SSF54518	SUPFAM:SSF81383	unigene:Sbi.8380	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0001A84EE8	RefSeq:XP_002456692.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:68382920..68386377

Molecular Weight (calculated)

53414.8 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.373

Length

480 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR SFEVTLASIY GLTGHHKGKT QSSLHELDDS PSIIRESRWA NLPPELIRDI IRRLEADEST WPARKHVVCF AAVCRTWREM
101: CKEIVLSPEL CGKLTFPVSL KQPGPRDGNT MIQCFIKRNK SKSTYYLYLC LSNVVTSESG KFLLSAKRHR KTTCTEYTIS MDSGNISRSS RTYIGKIRSN
201: FLGTRFLIYD TQPPYNGAVV PPSGRTSRRF NSTKVSPKLP SVSYNIAQVS YELNVLGTRG PRRMRCIMHS IPASSVEPGG IVPGQPEQIV PRALEDSFRS
301: TASFSQSFRS TTSLSKSIMD SSMDFNSARF SDIGGSSARF TGIPGSSARF TGIPGSSARF SGIAEGRLDN DEESETKERP LVLRNKPPRW HEQLQCWCLN
401: FRGRVTIASV KNFQLIAATT PPPAGAPTPS QPAPSDPDKV ILQFGKVARD MFTMDYRYPL SAFQAFAICL SSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.