Factsheet for Zm00001d042724_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01812	Sorghum	mitochondrion	96.46	96.46
Os01t0866800-01	Rice	mitochondrion	82.29	88.17
HORVU3Hr1G083290.1	Barley	mitochondrion	80.42	85.97
TraesCS3A01G378300.1	Wheat	mitochondrion	80.21	85.75
TraesCS3D01G371600.1	Wheat	mitochondrion	80.21	85.75
TraesCS3B01G411000.1	Wheat	mitochondrion	80.21	85.56
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	48.33	75.32
Zm00001d038310_P003	Maize	mitochondrion	69.79	67.27
Zm00001d002896_P001	Maize	cytosol	60.83	66.36
Zm00001d053179_P001	Maize	cytosol	61.25	65.62
Zm00001d052765_P002	Maize	mitochondrion	61.04	64.25
Zm00001d029165_P004	Maize	cytosol, plastid	46.88	56.11
Zm00001d051568_P001	Maize	cytosol	46.04	50.69
Zm00001d011578_P003	Maize	nucleus	37.71	50.56
Zm00001d017773_P001	Maize	cytosol	45.83	50.34
Zm00001d038691_P001	Maize	mitochondrion	35.83	46.87
Zm00001d043895_P003	Maize	cytosol	36.67	46.56
Zm00001d007106_P001	Maize	cytosol	28.75	44.23
Zm00001d033948_P004	Maize	cytosol	10.62	28.18
Zm00001d029092_P001	Maize	mitochondrion	15.0	20.81
Zm00001d047019_P001	Maize	mitochondrion	15.0	20.81
Zm00001d015485_P001	Maize	plastid	15.83	18.91
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	9.17	16.06

Protein Annotations

EntrezGene:100191903	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:B4FAL2	EMBL:BT034150	EMBL:BT034382
EMBL:BT061856	EMBL:BT067260	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	ProteinID:ONM36180.1	ProteinID:ONM36181.1	ProteinID:ONM36182.1
ProteinID:ONM36183.1	ProteinID:ONM36184.1	ProteinID:ONM36185.1	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI00017B6264	EnsemblPlantsGene:Zm00001d042724	EnsemblPlants:Zm00001d042724_P002
EnsemblPlants:Zm00001d042724_T002	SEG:seg	:	:	:	:

Description

TUB-transcription factor 2 TUB-transcription factor 2

Coordinates

chr3:-:178236350..178240117

Molecular Weight (calculated)

53237.6 Da

IEP (calculated)

10.339

GRAVY (calculated)

-0.357

Length

480 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR SFEVTLASIY GLTGHHKGKT QSSSHVLDDS PSIIRESRWA NLPPELIRDI IRRLEADEST WPARKHVVCF AAVCRTWREM
101: CKEIVLSPEF CGKLTFPVSL KQPGPRDGNT MVQCFIKRNK SKSTYHLYLC LSNVVTSESG KFLLSAKRHR KTTCTEYTIS MDSGNISRSK RTYIGKIRSN
201: FLGTRFLIYD TQPPYNGAVV PPAGRTSRRF NSTKVSPKLP SVSYNIAQVS YELNVLGTRG PRRMRCIMHS IPASSVEPGG TVPGQPEQIV PRALEDSFRS
301: TASFSQSFRS TASFSKSIMD SSMDFNSARF SDIAGSSARF TGVPGSSARF AGVPGSSARF SGIAGARLDN DEESETKERP LVLRNKPPRW HEQLQCWCLN
401: FRGRVTIASV KNFQLIAAAT PPPAGAPTPS QPAPSDPDKV ILQFGKVARD MFTMDYRYPL SAFQAFAICL SSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.