Factsheet for Zm00001d007106_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97690	Sorghum	cytosol	67.31	52.63
VIT_01s0010g01060.t01	Wine grape	mitochondrion	8.33	48.15
Os07t0667000-01	Rice	cytosol	61.86	47.54
Zm00001d029165_P004	Maize	cytosol, plastid	58.65	45.64
TraesCS2B01G141800.1	Wheat	cytosol	55.13	45.5
TraesCS2D01G122900.1	Wheat	cytosol	54.49	45.45
TraesCS2A01G120900.1	Wheat	mitochondrion	54.49	45.21
Zm00001d047019_P001	Maize	mitochondrion	49.36	44.51
GSMUA_Achr1P11290_001	Banana	cytosol	57.69	44.34
Zm00001d029092_P001	Maize	mitochondrion	49.04	44.22
VIT_07s0104g01290.t01	Wine grape	cytosol	57.05	43.95
GSMUA_Achr3P17440_001	Banana	cytosol	55.77	43.18
CDY55525	Canola	cytosol	54.81	42.54
PGSC0003DMT400029513	Potato	cytosol	53.85	42.42
Solyc09g074510.2.1	Tomato	cytosol	53.85	42.42
Bra021446.1-P	Field mustard	cytosol	54.49	42.29
AT2G47900.3	Thale cress	cytosol	54.81	42.01
CDY27467	Canola	cytosol	53.21	41.81
KRH71532	Soybean	cytosol	51.92	40.5
Zm00001d011578_P003	Maize	nucleus	40.06	34.92
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	28.85	32.85
Zm00001d002896_P001	Maize	cytosol	46.15	32.73
Zm00001d051568_P001	Maize	cytosol	45.51	32.57
Zm00001d017773_P001	Maize	cytosol	45.51	32.49
Zm00001d043895_P003	Maize	cytosol	38.78	32.01
Zm00001d038691_P001	Maize	mitochondrion	36.54	31.06
Zm00001d053179_P001	Maize	cytosol	44.55	31.03
Zm00001d038310_P003	Maize	mitochondrion	47.76	29.92
Zm00001d052765_P002	Maize	mitochondrion	43.27	29.61
Zm00001d042724_P002	Maize	mitochondrion	44.23	28.75
VIT_01s0010g01050.t01	Wine grape	cytosol	11.86	27.41
VIT_00s0426g00050.t01	Wine grape	extracellular	12.18	23.9
Zm00001d033948_P004	Maize	cytosol	13.78	23.76
Zm00001d015485_P001	Maize	plastid	15.71	12.19

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A1D6F3U2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	ProteinID:ONM26004.1	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0008441592	EnsemblPlantsGene:Zm00001d007106	EnsemblPlants:Zm00001d007106_P001	EnsemblPlants:Zm00001d007106_T001
SEG:seg	:	:	:	:	:

Description

Tubby-like F-box protein 3

Coordinates

chr2:+:222391001..222393219

Molecular Weight (calculated)

33682.0 Da

IEP (calculated)

10.184

GRAVY (calculated)

-0.185

Length

312 amino acids

Sequence
(BLAST)

001: MIQEMKGEIG AISSRGVLRL RPGSHAGAGR APAAEPDEAP REGCWAQLPL ELLRMVLVRV EDQEPRWPGR SAVVACACVC RCWRAAVKEI VRVLEASGKL
101: TFPISLKQLM MGNFLLAARK CRRPACTEYL ISLDAKNTSA GSYIGKLRSN FLGTKFTVYD AHPPCARAAV SKGYMIGSAH VSPGVPAGNY PVSHISYYAT
201: LGSRVPRKMK CVMDSIPVSA IKGGGTAPTQ TEFPSMSSSS FASVPFFTRK PGHRPDSCPG VPPGTQNETK TVLKNKSPRW HQPLQCWCLN FHGRVTVASV
301: KELPAGGGFG RE

Best Arabidopsis Sequence Match ( AT1G43640.1 )
(BLAST)

001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE

Arabidopsis Description

TULP5Tubby-like F-box protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q944S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.