Factsheet for Zm00001d017773_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07397	Sorghum	cytosol	93.59	94.46
Zm00001d051568_P001	Maize	cytosol	92.91	93.12
Os02t0705300-01	Rice	cytosol	86.04	87.85
TraesCS6B01G300200.1	Wheat	cytosol	85.58	87.79
TraesCS6D01G252800.1	Wheat	cytosol	85.13	87.53
HORVU6Hr1G068970.3	Barley	cytosol	85.13	87.12
TraesCS6A01G272800.1	Wheat	cytosol	84.67	86.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	32.72	80.34
GSMUA_Achr2P23080_001	Banana	cytosol	24.26	77.94
GSMUA_Achr6P09030_001	Banana	cytosol	60.87	73.48
KRH76777	Soybean	cytosol	66.59	70.12
VIT_04s0023g01950.t01	Wine grape	cytosol	65.9	69.73
KRH28692	Soybean	cytosol	65.9	69.57
Solyc04g071750.2.1	Tomato	cytosol	62.7	68.5
PGSC0003DMT400016310	Potato	cytosol	62.24	67.83
Solyc03g033980.2.1	Tomato	cytosol	62.47	67.24
GSMUA_Achr2P22940_001	Banana	cytosol	56.29	67.03
PGSC0003DMT400058090	Potato	cytosol	62.24	67.0
PGSC0003DMT400009280	Potato	cytosol	62.01	66.58
Solyc02g085130.2.1	Tomato	cytosol	62.24	66.18
VIT_18s0001g12660.t01	Wine grape	cytosol	62.7	65.87
KRH08239	Soybean	cytosol	62.01	65.46
PGSC0003DMT400040088	Potato	cytosol	61.33	65.37
KRH69894	Soybean	cytosol	61.78	65.22
Solyc02g062670.2.1	Tomato	cytosol	61.33	65.21
KRH15179	Soybean	cytosol	61.33	63.36
CDY25159	Canola	cytosol	53.32	62.13
CDY46301	Canola	cytosol	53.55	61.9
Bra039620.1-P	Field mustard	cytosol	53.55	61.9
AT2G18280.2	Thale cress	cytosol	54.92	60.91
CDY10578	Canola	mitochondrion	5.72	59.52
KRH05837	Soybean	mitochondrion	61.33	59.03
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	40.05	58.92
CDY65687	Canola	cytosol, mitochondrion	49.43	57.75
AT1G47270.1	Thale cress	nucleus	54.0	57.14
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.72	57.07
CDY17028	Canola	mitochondrion, nucleus	51.26	56.71
Bra015624.1-P	Field mustard	cytosol, mitochondrion	51.95	56.33
Zm00001d029165_P004	Maize	cytosol, plastid	50.8	55.36
Zm00001d011578_P003	Maize	nucleus	41.65	50.84
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	22.65	50.25
Zm00001d053179_P001	Maize	cytosol	51.03	49.78
Zm00001d002896_P001	Maize	cytosol	50.11	49.77
Zm00001d038691_P001	Maize	mitochondrion	40.96	48.77
Zm00001d052765_P002	Maize	mitochondrion	49.43	47.37
Zm00001d043895_P003	Maize	cytosol	40.27	46.56
Zm00001d038310_P003	Maize	mitochondrion	52.63	46.18
Zm00001d042724_P002	Maize	mitochondrion	50.34	45.83
Zm00001d007106_P001	Maize	cytosol	32.49	45.51
GSMUA_Achr10P...	Banana	nucleus	21.05	43.81
Zm00001d033948_P004	Maize	cytosol	16.25	39.23
CDY06747	Canola	cytosol, mitochondrion	50.11	37.89
Zm00001d015485_P001	Maize	plastid	20.59	22.39
Zm00001d029092_P001	Maize	mitochondrion	16.25	20.52
Zm00001d047019_P001	Maize	mitochondrion	16.25	20.52
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	10.98	17.52

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100273859	MapMan:15.5.21	ProteinID:AQK74014.1	UniProt:B4FXU9	EMBL:BT041937
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0001A595A0	EnsemblPlantsGene:Zm00001d017773	EnsemblPlants:Zm00001d017773_P001	EnsemblPlants:Zm00001d017773_T001	SEG:seg

Description

TUB-transcription factor 9TUB-transcription factor 9

Coordinates

chr5:+:206380933..206384191

Molecular Weight (calculated)

48303.8 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.435

Length

437 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGSGSDG RAAGHARSGS RHSWPSLWAE QQQPQRQGQG QGLGQEGPRH QHQGRWADLP PELLLDVIQR VESSEATWPA
101: RRQVVACAAV CRSWREVTKD VVKTLEECGR ITFPISLKQP GPRELPVQCF VRRERATSTY LLYLGLSPSM NVENDKLLLA ARKVRRATRT SFVISLVSDD
201: FSRSSSTYVG KLKPNFLGTK FTIFDSQPPP DAVALPNNRP SKRQSKQVSP RLPLGNYNVA TVTYELTVLR NRGPRRMQCT MHSIPAECIQ EGGKAPTPTG
301: TVQSLDEPVP TLPSTTKGKE VAVQFSSTSL SADLSGPVSG NEAPLVLKNK APRWHEQLQC WCLNFRGRVT VASVKNFQLV ASVDPSLNVP AAEQEKVILQ
401: FGKIGKDIFT MDYRYPLSAF QAFAICLTSF DTKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.