Factsheet for Bra015624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014159.1-P
Bra018756.1-P
Bra018757.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47270.1	Bra014159.1-P	AT3G60010.1	25168737
AT1G47270.1	Bra018756.1-P	AT3G60010.1	25168737
AT1G47270.1	Bra018757.1-P	AT3G60010.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040862.1-P	Field mustard	mitochondrion, nucleus	83.62	85.1
AT1G47270.1	Thale cress	nucleus	83.37	81.36
GSMUA_Achr2P23080_001	Banana	cytosol	23.08	68.38
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.78	65.17
CDY06747	Canola	cytosol, mitochondrion	92.8	64.71
GSMUA_Achr6P09030_001	Banana	cytosol	54.84	61.05
Solyc04g071750.2.1	Tomato	cytosol	58.31	58.75
Bra039620.1-P	Field mustard	cytosol	55.09	58.73
PGSC0003DMT400016310	Potato	cytosol	57.57	57.86
PGSC0003DMT400009280	Potato	cytosol	58.31	57.74
Solyc03g033980.2.1	Tomato	cytosol	57.82	57.39
VIT_04s0023g01950.t01	Wine grape	cytosol	58.56	57.14
PGSC0003DMT400058090	Potato	cytosol	57.57	57.14
Solyc02g085130.2.1	Tomato	cytosol	58.06	56.93
PGSC0003DMT400040088	Potato	cytosol	57.82	56.83
KRH28692	Soybean	cytosol	58.31	56.76
KRH76777	Soybean	cytosol	58.31	56.63
Solyc02g062670.2.1	Tomato	cytosol	57.32	56.2
GSMUA_Achr2P22940_001	Banana	cytosol	50.62	55.59
KRH69894	Soybean	cytosol	57.07	55.56
KRH08239	Soybean	cytosol	55.34	53.86
EES07397	Sorghum	cytosol	56.58	52.66
Bra020754.1-P	Field mustard	cytosol	44.91	52.62
TraesCS6B01G300200.1	Wheat	cytosol	55.09	52.11
Zm00001d051568_P001	Maize	cytosol	56.33	52.06
TraesCS6D01G252800.1	Wheat	cytosol	54.84	52.0
Zm00001d017773_P001	Maize	cytosol	56.33	51.95
HORVU6Hr1G068970.3	Barley	cytosol	54.84	51.76
TraesCS6A01G272800.1	Wheat	cytosol	54.84	51.52
Bra024763.1-P	Field mustard	cytosol	55.34	50.91
Bra012486.1-P	Field mustard	cytosol	55.58	50.56
Bra021446.1-P	Field mustard	cytosol	49.88	50.0
Bra010985.1-P	Field mustard	cytosol	54.34	49.89
Bra040803.1-P	Field mustard	cytosol	53.6	48.32
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.24	46.46
Bra041095.1-P	Field mustard	cytosol, mitochondrion	42.93	45.89
Bra002179.1-P	Field mustard	mitochondrion	45.16	45.61
Bra015711.1-P	Field mustard	cytosol, mitochondrion	52.61	45.59
Bra030942.1-P	Field mustard	mitochondrion	41.69	42.86
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	18.36	37.56
GSMUA_Achr10P...	Banana	nucleus	18.11	34.76
Zm00001d033948_P004	Maize	cytosol	14.39	32.04
Bra026081.1-P	Field mustard	nucleus	19.6	20.31

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra015624	EnsemblPlants:Bra015624.1	EnsemblPlants:Bra015624.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR025659	UniProt:M4DGJ9	PFAM:PF01167	PFAM:PF12937	PRINTS:PR01573	ScanProsite:PS01200
PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI00025449EF	SEG:seg	:	:	:

Description

AT1G47270 (E=1e-188) AtTLP6 | AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA10:+:488145..489611

Molecular Weight (calculated)

44987.3 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.389

Length

403 amino acids

Sequence
(BLAST)

001: MPFKKIVREL RGRNKAVGRR GRSHIAPEGS SSSSSSSSSP STDECSEQSI WVDLPPELLL DIIHRIESGQ TLWPGRRDVV ACASVCRSWR EMTKDEVVKV
101: PELSGLLTFP VSLKQPGPRD APIQCFIKRE RATGIYRLYL GLSPALSGDK SKLLLSAKKV RRATGMEFVV SLSGNDFSRS STSYIGKLRS NFLGTKFTVY
201: ENRPPLVHSE TSSNRKQPPS MRVSPWVSSS PHSYKMASIL YELNVLRTRG PRRMQCIMNS IPVSSIQEGG QVHSPTEFTN LGNKKNKKSM MDLCTGNMGG
301: ESVVKEPLVL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLIAAAAEAG KNMNIPEEEQ ERVILQFGKI GKDIFTMDYR YPISAFQAFA ICLSSFDTKP
401: VCE

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.