Factsheet for Bra015711.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76900.1	Bra003735.1-P	AT1G75950.1	25168737
AT1G76900.1	Bra008231.1-P	AT1G75950.1	25168737
AT1G76900.1	Bra015801.1-P	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87562	Canola	cytosol, mitochondrion	95.05	98.0
CDY65845	Canola	cytosol, mitochondrion	94.41	97.56
Bra040803.1-P	Field mustard	cytosol	87.96	91.5
AT1G76900.1	Thale cress	cytosol	84.52	86.37
HORVU5Hr1G023650.1	Barley	plastid	38.49	74.27
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	64.95	70.56
Bra024763.1-P	Field mustard	cytosol	64.09	68.04
Bra010985.1-P	Field mustard	cytosol	64.09	67.88
Bra012486.1-P	Field mustard	cytosol	64.3	67.49
TraesCS4D01G110100.1	Wheat	golgi	62.37	65.91
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	61.94	65.45
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	61.94	65.45
KXG23034	Sorghum	cytosol, mitochondrion	61.51	65.45
Os12t0163400-01	Rice	cytosol	62.37	65.17
TraesCS5A01G124100.1	Wheat	cytosol	60.43	64.01
TraesCS5B01G123800.1	Wheat	golgi	60.43	64.01
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	60.22	63.78
Zm00001d053179_P001	Maize	cytosol	59.57	61.83
EES08030	Sorghum	cytosol, mitochondrion	59.78	60.96
GSMUA_Achr11P...	Banana	cytosol	51.61	57.83
Bra039620.1-P	Field mustard	cytosol	44.3	54.5
Bra020754.1-P	Field mustard	cytosol	39.57	53.49
Bra021446.1-P	Field mustard	cytosol	46.24	53.48
Bra015624.1-P	Field mustard	cytosol, mitochondrion	45.59	52.61
Bra040862.1-P	Field mustard	mitochondrion, nucleus	44.09	51.77
Bra041095.1-P	Field mustard	cytosol, mitochondrion	39.57	48.81
Bra030942.1-P	Field mustard	mitochondrion	39.78	47.19
Bra002179.1-P	Field mustard	mitochondrion	40.43	47.12
Bra026081.1-P	Field mustard	nucleus	17.42	20.82

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra015711	EnsemblPlants:Bra015711.1	EnsemblPlants:Bra015711.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR025659	UniProt:M4DGT5	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002541A2D	SEG:seg	:	:

Description

AT1G76900 (E=2e-184) AtTLP1 | AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA07:+:21226277..21229632

Molecular Weight (calculated)

52750.2 Da

IEP (calculated)

9.864

GRAVY (calculated)

-0.475

Length

465 amino acids

Sequence
(BLAST)

001: MITTLKWAVR TFEREHTKTM SFRSIVRDVR DSIGNLSRRR FDFKLSNQHK EGGGAKSRGS VQDCHEEQQQ QQQPLALLVQ ETPWANLPLE LLRDVIKRLE
101: ESESAWPARK HVVACASVCR SWRDMCKEIV QRPEVSGKIT FPVSLKQPGP RDATMQCFIK RDKSNLTYHL YLCLSPALLV ENGKFLLSAK RIRRTTYTEY
201: VISMHADTIS RSSNTYIGKI RSNFLGTKFI IYDTQPPYNN NNKPSQAVQP LGLSRRFYSK RVSPKVPTGS YKIAQVSYEL NVLGTRGPRR MHCAMDSIPA
301: SSLAEGGTVP GQPEIIVPRS ILDESFRTIT SSSSSRKFIS DYSAEFNSAR FSDILGPLGE EEEEEGKERV SSPPLVLKNK PPRWHEQLQC WCLNFRGRVT
401: VASVKNFQLI AANQPQTQSD GPDKILLQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.