CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76900.1	CDX68112	AT1G75950.1	25168737
AT1G76900.1	CDX73212	AT1G75950.1	25168737
AT1G76900.1	CDX80590	AT1G75950.1	25168737
AT1G76900.1	CDX85931	AT1G75950.1	25168737
AT1G76900.1	CDX87650	AT1G75950.1	25168737
AT1G76900.1	CDY13521	AT1G75950.1	25168737
AT1G76900.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87562	Canola	cytosol, mitochondrion	98.44	98.23
Bra015711.1-P	Field mustard	cytosol, mitochondrion	97.56	94.41
CDY45959	Canola	cytosol	87.78	92.07
CDY13570	Canola	cytosol	86.67	91.76
AT1G76900.1	Thale cress	cytosol	86.0	85.05
CDY13913	Canola	endoplasmic reticulum, extracellular	5.33	80.0
HORVU5Hr1G023650.1	Barley	plastid	38.67	72.2
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	66.89	70.33
CDY36119	Canola	cytosol	65.11	69.43
CDY51990	Canola	cytosol	65.11	69.27
CDY66464	Canola	cytosol	65.78	69.0
CDX84977	Canola	cytosol	64.22	68.81
CDY42119	Canola	cytosol	65.56	67.51
CDY72036	Canola	cytosol	65.78	66.82
TraesCS4D01G110100.1	Wheat	golgi	63.78	65.23
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	63.33	64.77
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	63.33	64.77
KXG23034	Sorghum	cytosol, mitochondrion	62.67	64.53
Os12t0163400-01	Rice	cytosol	63.78	64.49
TraesCS5B01G123800.1	Wheat	golgi	61.56	63.1
TraesCS5A01G124100.1	Wheat	cytosol	61.56	63.1
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	61.33	62.87
CDY10578	Canola	mitochondrion	5.78	61.9
Zm00001d053179_P001	Maize	cytosol	61.33	61.61
EES08030	Sorghum	cytosol, mitochondrion	61.33	60.53
GSMUA_Achr11P...	Banana	cytosol	53.56	58.07
CDY02510	Canola	cytosol	39.56	55.45
CDY46301	Canola	cytosol	45.78	54.5
CDY25159	Canola	cytosol	45.33	54.4
CDY27467	Canola	cytosol	47.78	54.16
CDY25719	Canola	cytosol	39.33	53.64
CDY55525	Canola	cytosol	47.78	53.48
CDY24698	Canola	mitochondrion	41.56	52.97
CDY05258	Canola	mitochondrion	42.22	52.78
CDY65687	Canola	cytosol, mitochondrion	43.78	52.67
CDY17085	Canola	cytosol, mitochondrion	45.78	52.28
CDY17028	Canola	mitochondrion, nucleus	44.89	51.14
CDY25863	Canola	cytosol, mitochondrion	41.56	49.6
CDY45927	Canola	cytosol, plastid	41.11	49.33
CDX92589	Canola	mitochondrion	40.44	48.66
CDY13914	Canola	mitochondrion	22.67	41.8
CDY06747	Canola	cytosol, mitochondrion	45.33	35.29
CDY69989	Canola	nucleus	18.22	20.92
CDY35067	Canola	nucleus	18.0	20.82
CDY17084	Canola	mitochondrion	0.22	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078JH88	EnsemblPlants:CDY65845	ProteinID:CDY65845
ProteinID:CDY65845.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00050886001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EEC531	SEG:seg	:

Description

BnaCnng48830DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH88]

Coordinates

chrLK034976:+:8693..12259

Molecular Weight (calculated)

50912.1 Da

IEP (calculated)

9.892

GRAVY (calculated)

-0.460

Length

450 amino acids

Sequence
(BLAST)

001: MITTLKWAVR TFEREHTKTM SFRSIVRDVR DSIGNLSRRS FDFKLSSLHK EGGGKSRGSV QDCHEEQQQQ QQPLALVVQE TPWANLPPEL LRDVIKRLEE
101: SESAWPARKH VVACASVCRS WRDMCKEIVQ RPEVSGKITF PVSLKQPGPR DATMQCFIKR DKSNLTYHLY LCLSPALLVE NGKFLLSAKR IRRTTYTEYV
201: ISMHADTISR SSNTYIGKIR SNFLGTKFII YDTQPPYNNN NKASQAVQPL GLSRRFYSKR VSPKVPTGSY KIAQVSYELN VLGTRGPRRM HCAMDSIPAS
301: SLAEGGTVPG QPEIIAPRSL LDESFRTITS SSSRKFSDIL GTLGEEEEEE GKERVSSPPL VLKNKPPRWH EQLQCWCLNF RGRVTVASVK NFQLIAANQP
401: QTQSDGPDKI LLQFGKVGKD MFTMDFRYPL SAFQAFAICL SSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.