CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53320.1	CDX68112	AT1G75950.1	25168737
AT1G53320.1	CDX73212	AT1G75950.1	25168737
AT1G53320.1	CDX80590	AT1G75950.1	25168737
AT1G53320.1	CDX85931	AT1G75950.1	25168737
AT1G53320.1	CDX87650	AT1G75950.1	25168737
AT1G53320.1	CDY13521	AT1G75950.1	25168737
AT1G53320.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02510	Canola	cytosol	94.24	96.88
Bra030942.1-P	Field mustard	mitochondrion	98.18	82.65
AT1G53320.1	Thale cress	mitochondrion	92.12	80.21
CDY25863	Canola	cytosol, mitochondrion	90.61	79.31
CDY45927	Canola	cytosol, plastid	89.39	78.67
GSMUA_Achr7P25250_001	Banana	cytosol	71.21	73.9
CDY13913	Canola	endoplasmic reticulum, extracellular	6.67	73.33
GSMUA_Achr3P31460_001	Banana	cytosol	70.0	72.19
GSMUA_Achr4P01150_001	Banana	cytosol	69.39	71.79
KRH27356	Soybean	mitochondrion	80.0	69.84
KRH21960	Soybean	mitochondrion	80.0	69.29
CDY10578	Canola	mitochondrion	8.48	66.67
VIT_19s0014g01250.t01	Wine grape	mitochondrion	78.79	64.84
TraesCS3B01G304600.1	Wheat	cytosol	68.79	64.67
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	57.27	64.07
TraesCS3D01G270500.1	Wheat	cytosol	68.79	63.94
TraesCS3A01G270800.1	Wheat	cytosol	68.48	63.66
HORVU3Hr1G061930.1	Barley	cytosol	68.18	63.2
Os01t0674500-01	Rice	cytosol	67.58	62.64
Zm00001d011578_P003	Maize	nucleus	67.58	62.29
EES03425	Sorghum	plastid	67.27	61.67
PGSC0003DMT400018209	Potato	mitochondrion	71.82	61.4
Os05t0560400-00	Rice	cytosol	65.15	61.08
Solyc07g062390.2.1	Tomato	mitochondrion	71.21	60.88
GSMUA_Achr4P10540_001	Banana	mitochondrion	69.39	59.64
GSMUA_Achr10P...	Banana	mitochondrion	66.06	58.92
Os05t0514300-01	Rice	mitochondrion	65.76	58.33
Zm00001d038691_P001	Maize	mitochondrion	64.55	58.04
EES18499	Sorghum	mitochondrion	65.15	57.8
Zm00001d043895_P003	Maize	cytosol	64.24	56.08
TraesCS1A01G333900.1	Wheat	mitochondrion	63.33	56.03
TraesCS1B01G347200.1	Wheat	mitochondrion	63.03	55.76
TraesCS1D01G336400.1	Wheat	mitochondrion	63.33	55.59
HORVU1Hr1G076900.1	Barley	cytosol	62.12	53.25
OQU78419	Sorghum	cytosol	60.61	53.05
Os01t0759100-01	Rice	cytosol, plastid	53.94	48.37
CDY24698	Canola	mitochondrion	49.39	46.18
CDY25159	Canola	cytosol	52.42	46.13
CDY46301	Canola	cytosol	51.82	45.24
CDY05258	Canola	mitochondrion	49.09	45.0
CDY27467	Canola	cytosol	53.03	44.08
CDY55525	Canola	cytosol	53.64	44.03
CDX92589	Canola	mitochondrion	49.39	43.58
CDY36119	Canola	cytosol	53.64	41.94
CDX84977	Canola	cytosol	53.33	41.9
CDY42119	Canola	cytosol	55.15	41.65
CDY13570	Canola	cytosol	53.64	41.65
CDY51990	Canola	cytosol	53.03	41.37
CDY45959	Canola	cytosol	53.64	41.26
CDY65687	Canola	cytosol, mitochondrion	46.67	41.18
CDY66464	Canola	cytosol	53.03	40.79
CDY17028	Canola	mitochondrion, nucleus	48.18	40.25
CDY17085	Canola	cytosol, mitochondrion	47.58	39.85
CDY72036	Canola	cytosol	53.03	39.5
CDY65845	Canola	cytosol, mitochondrion	53.64	39.33
CDX87562	Canola	cytosol, mitochondrion	53.64	39.25
CDY13914	Canola	mitochondrion	28.79	38.93
HORVU0Hr1G001350.2	Barley	cytosol	36.97	32.71
CDY06747	Canola	cytosol, mitochondrion	46.67	26.64
CDY69989	Canola	nucleus	20.91	17.6
CDY35067	Canola	nucleus	20.61	17.48
CDY17084	Canola	mitochondrion	0.3	0.49

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078GKC8	EnsemblPlants:CDY25719	ProteinID:CDY25719	ProteinID:CDY25719.1
ncoils:Coil	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00033068001
InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0004EDB41E	SEG:seg	:	:	:

Description

BnaC03g69560DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKC8]

Coordinates

chrLK032179:+:266113..268688

Molecular Weight (calculated)

36729.0 Da

IEP (calculated)

10.026

GRAVY (calculated)

-0.452

Length

330 amino acids

Sequence
(BLAST)

001: MLPELLGEII RRVEGSEDQW PHRRDVVSCA CVSKKWREIA QEMVRSPVNS GKITFPSCLK LPGPREFSNQ CLIKRNKKTS TFYLYLALTP SFTDKGKFLL
101: AARRFRTGAY TEYIISLDAD DFSQGSNAYV GKLRSDFLGT NFTVYDSQPP HNGAKPSNGK ASRRFASKQI SPQVPAGNFE VGHVSYKFNL LKSRGPRRMI
201: STLRCPSSSP PPPSADQNPC GVVTKMMKKP NKDGSGLTIL KNKAPRWHEH LQCWCLNFHG RVTVASVKNF QLAATVDQSQ PGGKGDEETV LLQFGKVGDD
301: TFTMDYRQPL SAFQAFAICL TSFGTKLACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.