CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06747	Canola	cytosol, mitochondrion	97.55	34.43
CDY13913	Canola	endoplasmic reticulum, extracellular	0.49	3.33
CDY10578	Canola	mitochondrion	0.49	2.38
CDY02510	Canola	cytosol	0.49	0.31
CDY25719	Canola	cytosol	0.49	0.3
CDY24698	Canola	mitochondrion	0.49	0.28
CDY05258	Canola	mitochondrion	0.49	0.28
CDX92589	Canola	mitochondrion	0.49	0.27
CDY45927	Canola	cytosol, plastid	0.49	0.27
CDY25159	Canola	cytosol	0.49	0.27
CDY25863	Canola	cytosol, mitochondrion	0.49	0.27
CDY46301	Canola	cytosol	0.49	0.26
CDY35067	Canola	nucleus	0.49	0.26
CDY69989	Canola	nucleus	0.49	0.26
CDY17085	Canola	cytosol, mitochondrion	0.49	0.25
CDY27467	Canola	cytosol	0.49	0.25
CDY55525	Canola	cytosol	0.49	0.25
CDX84977	Canola	cytosol	0.49	0.24
CDY36119	Canola	cytosol	0.49	0.24
CDY51990	Canola	cytosol	0.49	0.24
CDY13570	Canola	cytosol	0.49	0.24
CDY66464	Canola	cytosol	0.49	0.23
CDY45959	Canola	cytosol	0.49	0.23
CDY42119	Canola	cytosol	0.49	0.23
CDY72036	Canola	cytosol	0.49	0.23
CDY65845	Canola	cytosol, mitochondrion	0.49	0.22
CDX87562	Canola	cytosol, mitochondrion	0.49	0.22
CDY65687	Canola	cytosol, mitochondrion	0.0	0.0
CDY17028	Canola	mitochondrion, nucleus	0.0	0.0
CDY13914	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY17084	EnsemblPlantsGene:GSBRNA2T00095096001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43080
PANTHER:PTHR43080:SF5	PFAM:PF00571	PFscan:PS51371	ProteinID:CDY17084	ProteinID:CDY17084.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EDAD7B	UniProt:A0A078FVI3	MapMan:35.1	:

Description

BnaC06g00170DBnaC06g00170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVI3]

Coordinates

chrLK032070:-:276801..278776

Molecular Weight (calculated)

22246.2 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.184

Length

204 amino acids

Sequence
(BLAST)

001: MKAFVRGLIA RANLEMPKIQ RKWAWKESAG FGGVTPPPPP PEKGLENLTV ADVLLTKDTD GGGGGKVDTL ISCRTNDTVF DAVKNMAKHN IGSLVVLRPG
101: DQQYIAGIVT ERDYMKKIIG AGRSSKVTKV GEVMTDESKL VSVSSGTNII KAMQLMSENH IRHVPVIDGK IVGMISMVDV VRAIVDHQNG ELKRLNQFIK
201: GDYY

Best Arabidopsis Sequence Match ( AT1G47271.1 )
(BLAST)

001: MKAFVRGLLA RANEVPKIHQ RKVSAGFGCL TSPPPPEKGL ENLTVADVLS TKDTDIDTWI SCRTNDTVSD AVKNMAKHNI GSLVVLEPGD QQYIAGIVTE
101: RDYMKKIIGA GRSSKLTKVG EVMTDESKLV TVSSGTNIIK AMQLMSENHI RHVPVIDGKI VGLISMVDVV KAIVDHQNGE LKRLNEFIKG DYY

Arabidopsis Description

Cystathionine beta-synthase (CBS) family protein [Source:UniProtKB/TrEMBL;Acc:B3H6Z2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.