CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65687	Canola	cytosol, mitochondrion	79.7	83.96
CDY17028	Canola	mitochondrion, nucleus	83.76	83.54
CDY13913	Canola	endoplasmic reticulum, extracellular	5.84	76.67
CDY06747	Canola	cytosol, mitochondrion	88.83	60.55
CDY46301	Canola	cytosol	54.06	56.35
CDY25159	Canola	cytosol	53.55	56.27
CDY24698	Canola	mitochondrion	45.43	50.71
CDY66464	Canola	cytosol	55.08	50.58
CDX84977	Canola	cytosol	53.81	50.48
CDY36119	Canola	cytosol	54.06	50.47
CDY51990	Canola	cytosol	53.81	50.12
CDY10578	Canola	mitochondrion	5.33	50.0
CDY05258	Canola	mitochondrion	45.69	50.0
CDY27467	Canola	cytosol	50.0	49.62
CDY72036	Canola	cytosol	55.58	49.44
CDY42119	Canola	cytosol	54.82	49.43
CDY55525	Canola	cytosol	50.0	49.01
CDY13570	Canola	cytosol	52.54	48.71
CDY45959	Canola	cytosol	52.79	48.48
CDY02510	Canola	cytosol	39.34	48.29
CDX92589	Canola	mitochondrion	45.18	47.59
CDY25719	Canola	cytosol	39.85	47.58
CDY65845	Canola	cytosol, mitochondrion	52.28	45.78
CDX87562	Canola	cytosol, mitochondrion	52.28	45.68
CDY25863	Canola	cytosol, mitochondrion	43.15	45.09
CDY45927	Canola	cytosol, plastid	42.39	44.53
CDY13914	Canola	mitochondrion	25.63	41.39
CDY35067	Canola	nucleus	19.29	19.54
CDY69989	Canola	nucleus	18.78	18.88
CDY17084	Canola	mitochondrion	0.25	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078FRI6	EnsemblPlants:CDY17085	ProteinID:CDY17085
ProteinID:CDY17085.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00095097001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF01167	PFAM:PF12937	PRINTS:PR01573
ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EDE506	SEG:seg	:	:

Description

BnaC06g00180DBnaC06g00180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRI6]

Coordinates

chrLK032070:-:278921..280985

Molecular Weight (calculated)

43976.3 Da

IEP (calculated)

10.239

GRAVY (calculated)

-0.325

Length

394 amino acids

Sequence
(BLAST)

001: MPFKKMVREL RGRNKAVGRS HIAPEGSSSS SSSPSTEQSI WVDLPPELLL DIIHRIESGQ SLWPGRRDVV ACASVCRSWR EMTKDEVVKA PQLSGLLTFP
101: VSLTQPGPRD APIQCFIKRE RATGIYRLYL GLSPALSGDK SKLLLSAKKV RMATGMEFVV SLSGNDFSRS STSYIGKLRS NFLGTKFTVY EIQPPPVYSE
201: RSSNRKLPPS MRVSPWVSSS TQSYNMASIL YELNVLRTRG PRRMQCIMNS IPVSSIQEGG QVHSPTEFTN LGNKKNKKKS VMDFCTGNMG GESVVKEPLV
301: LKNKSPRWHE QLQCWCLNFK GRVTVASVKN FQLIAAAAEA GKNMNIPEEE QERVILQFGK IGKDIFTMDY RYPISAFQAF AICLSSFDTK PVCQ

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.