CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18680.1	CDX68112	AT1G75950.1	25168737
AT5G18680.1	CDX73212	AT1G75950.1	25168737
AT5G18680.1	CDX80590	AT1G75950.1	25168737
AT5G18680.1	CDX85931	AT1G75950.1	25168737
AT5G18680.1	CDX87650	AT1G75950.1	25168737
AT5G18680.1	CDY13521	AT1G75950.1	25168737
AT5G18680.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92589	Canola	mitochondrion	96.31	62.83
Bra002179.1-P	Field mustard	mitochondrion	96.31	58.9
AT5G18680.1	Thale cress	mitochondrion	86.89	54.5
CDY24698	Canola	mitochondrion	71.31	49.29
CDY05258	Canola	mitochondrion	71.31	48.33
CDY27467	Canola	cytosol	56.56	34.76
CDY55525	Canola	cytosol	56.15	34.08
CDY02510	Canola	cytosol	38.93	29.59
CDY25719	Canola	cytosol	38.93	28.79
CDY25159	Canola	cytosol	43.44	28.27
CDY46301	Canola	cytosol	43.03	27.78
CDY45927	Canola	cytosol, plastid	41.8	27.2
CDY25863	Canola	cytosol, mitochondrion	41.8	27.06
CDY65687	Canola	cytosol, mitochondrion	41.39	27.01
CDY17028	Canola	mitochondrion, nucleus	42.62	26.33
CDY17085	Canola	cytosol, mitochondrion	41.39	25.63
CDY66464	Canola	cytosol	44.26	25.17
CDX84977	Canola	cytosol	43.03	25.0
CDY36119	Canola	cytosol	43.03	24.88
CDY51990	Canola	cytosol	43.03	24.82
CDY42119	Canola	cytosol	43.85	24.49
CDY72036	Canola	cytosol	44.26	24.38
CDY13570	Canola	cytosol	41.8	24.0
CDY45959	Canola	cytosol	41.8	23.78
CDX87562	Canola	cytosol, mitochondrion	42.21	22.84
CDY65845	Canola	cytosol, mitochondrion	41.8	22.67
CDY06747	Canola	cytosol, mitochondrion	42.21	17.82
CDY69989	Canola	nucleus	14.34	8.93
CDY35067	Canola	nucleus	13.93	8.74
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	0.82	3.39
CDY10578	Canola	mitochondrion	0.41	2.38
CDY17084	Canola	mitochondrion	0.0	0.0
CDY13913	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078FLX5	EnsemblPlants:CDY13914	ProteinID:CDY13914	ProteinID:CDY13914.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00078382001
InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517
PANTHER:PTHR16517:SF73	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0004EEDB6E
SEG:seg	:	:	:	:	:

Description

BnaC09g39120DBnaC09g39120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLX5]

Coordinates

chrLK032039:-:133152..134998

Molecular Weight (calculated)

27031.4 Da

IEP (calculated)

10.374

GRAVY (calculated)

-0.350

Length

244 amino acids

Sequence
(BLAST)

001: MTLRSLILEM RSRSHRVVHD LASAADSTPP ASSETNRWSD IPEELLREIL IRVEAADGGN WPSRRSVVAC AGVCRGWRLL MNETVGVPEI SSKLTFPISL
101: KQPGPRESLI QCFIKRNRAT QSYHLYLGLT NSLTDEGKFL LAASKLKHTT CTDYIVSLRS DDMSRRSQAY VGKVRSNFLG TKFTVFDGNM LPSSTSTGPA
201: RLRKNRSYNP AKASAKVPLG SFPVSHITYE LNVLGSRDQG RCNA

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.