CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53320.1	CDX68112	AT1G75950.1	25168737
AT1G53320.1	CDX73212	AT1G75950.1	25168737
AT1G53320.1	CDX80590	AT1G75950.1	25168737
AT1G53320.1	CDX85931	AT1G75950.1	25168737
AT1G53320.1	CDX87650	AT1G75950.1	25168737
AT1G53320.1	CDY13521	AT1G75950.1	25168737
AT1G53320.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25863	Canola	cytosol, mitochondrion	97.07	96.55
CDY02510	Canola	cytosol	76.8	89.72
CDY25719	Canola	cytosol	78.67	89.39
AT1G53320.1	Thale cress	mitochondrion	87.2	86.28
CDY13913	Canola	endoplasmic reticulum, extracellular	5.87	73.33
GSMUA_Achr7P25250_001	Banana	cytosol	61.6	72.64
GSMUA_Achr3P31460_001	Banana	cytosol	61.33	71.88
KRH27356	Soybean	mitochondrion	72.0	71.43
GSMUA_Achr4P01150_001	Banana	cytosol	60.53	71.16
KRH21960	Soybean	mitochondrion	72.0	70.87
Solyc07g062390.2.1	Tomato	mitochondrion	67.47	65.54
VIT_19s0014g01250.t01	Wine grape	mitochondrion	69.87	65.34
PGSC0003DMT400018209	Potato	mitochondrion	67.2	65.28
CDY10578	Canola	mitochondrion	7.2	64.29
TraesCS3B01G304600.1	Wheat	cytosol	59.47	63.53
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	49.87	63.39
TraesCS3D01G270500.1	Wheat	cytosol	59.47	62.82
Zm00001d011578_P003	Maize	nucleus	59.73	62.57
TraesCS3A01G270800.1	Wheat	cytosol	59.2	62.54
HORVU3Hr1G061930.1	Barley	cytosol	58.93	62.08
Os01t0674500-01	Rice	cytosol	58.93	62.08
EES03425	Sorghum	plastid	58.67	61.11
GSMUA_Achr4P10540_001	Banana	mitochondrion	62.4	60.94
Os05t0560400-00	Rice	cytosol	56.8	60.51
Os05t0514300-01	Rice	mitochondrion	59.73	60.22
Zm00001d038691_P001	Maize	mitochondrion	57.87	59.13
GSMUA_Achr10P...	Banana	mitochondrion	58.13	58.92
EES18499	Sorghum	mitochondrion	58.13	58.6
TraesCS1A01G333900.1	Wheat	mitochondrion	57.33	57.64
TraesCS1B01G347200.1	Wheat	mitochondrion	57.07	57.37
TraesCS1D01G336400.1	Wheat	mitochondrion	57.33	57.18
Zm00001d043895_P003	Maize	cytosol	56.0	55.56
HORVU1Hr1G076900.1	Barley	cytosol	54.67	53.25
OQU78419	Sorghum	cytosol	52.8	52.52
Os01t0759100-01	Rice	cytosol, plastid	49.6	50.54
CDY25159	Canola	cytosol	48.27	48.27
CDY24698	Canola	mitochondrion	45.33	48.16
CDY46301	Canola	cytosol	47.73	47.35
CDY05258	Canola	mitochondrion	45.33	47.22
CDX92589	Canola	mitochondrion	45.87	45.99
CDY27467	Canola	cytosol	48.27	45.59
CDY55525	Canola	cytosol	48.27	45.02
CDY36119	Canola	cytosol	49.07	43.6
CDY65687	Canola	cytosol, mitochondrion	43.47	43.58
CDY13570	Canola	cytosol	49.33	43.53
CDX84977	Canola	cytosol	48.53	43.33
CDY51990	Canola	cytosol	48.8	43.26
CDY66464	Canola	cytosol	49.33	43.12
CDY45959	Canola	cytosol	49.33	43.12
CDY42119	Canola	cytosol	50.13	43.02
CDY17028	Canola	mitochondrion, nucleus	44.8	42.53
CDY17085	Canola	cytosol, mitochondrion	44.53	42.39
CDY13914	Canola	mitochondrion	27.2	41.8
CDY72036	Canola	cytosol	49.33	41.76
CDY65845	Canola	cytosol, mitochondrion	49.33	41.11
CDX87562	Canola	cytosol, mitochondrion	49.33	41.02
HORVU0Hr1G001350.2	Barley	cytosol	32.53	32.71
CDY06747	Canola	cytosol, mitochondrion	44.8	29.07
CDY69989	Canola	nucleus	20.27	19.39
CDY35067	Canola	nucleus	19.73	19.02
CDY17084	Canola	mitochondrion	0.27	0.49

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078I739	EnsemblPlants:CDY45927	ProteinID:CDY45927	ProteinID:CDY45927.1
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00082916001	InterPro:IPR001810
InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517
PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EE9AE8
SEG:seg	:	:	:	:	:

Description

BnaC06g09960DBnaC06g09960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I739]

Coordinates

chrLK032642:+:25292..27757

Molecular Weight (calculated)

41827.0 Da

IEP (calculated)

10.016

GRAVY (calculated)

-0.472

Length

375 amino acids

Sequence
(BLAST)

001: MPLSGSLLSR RFSISSRDHQ GHTPTEPESP MLPPSSNVTG SSWSAMLPEL LSEIIRRVED TEDHWPLRRD VVACACVSKK WREITQETVR SPRNSGKITF
101: PSCLKLPGPR DFSNQCLIKR NKRTCTFYLY LPLTPSFTDK GKFLLAARRF RTGAYTEYVI SLDAHDFSQA SNAYVGKLRS DFLGTNFTVY DSKPPHNGAK
201: PSHGKASRRF ASKQISPQVP AGNFEVGHVS YKFNLLKSRG PRRMISTLHC PSSSPPPSSS TDQKLCDATK MMKKPIKDGS GLTILKNKAP RWHEHLQCWC
301: LNFHGRVTVA SVKNFQLVAT VDQSQPSGKG DEETVLLQFG KVGDDTFTMD YRQPLSAFQA FAICLASFGT KLACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.