CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18680.1	CDX68112	AT1G75950.1	25168737
AT5G18680.1	CDX73212	AT1G75950.1	25168737
AT5G18680.1	CDX80590	AT1G75950.1	25168737
AT5G18680.1	CDX85931	AT1G75950.1	25168737
AT5G18680.1	CDX87650	AT1G75950.1	25168737
AT5G18680.1	CDY13521	AT1G75950.1	25168737
AT5G18680.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10578	Canola	mitochondrion	56.67	40.48
CDY24698	Canola	mitochondrion	100.0	8.5
CDY05258	Canola	mitochondrion	100.0	8.33
CDX92589	Canola	mitochondrion	100.0	8.02
AT5G18680.1	Thale cress	mitochondrion	100.0	7.71
Bra002179.1-P	Field mustard	mitochondrion	100.0	7.52
CDY02510	Canola	cytosol	73.33	6.85
CDY25719	Canola	cytosol	73.33	6.67
CDY25159	Canola	cytosol	76.67	6.13
CDY46301	Canola	cytosol	76.67	6.08
CDY27467	Canola	cytosol	80.0	6.05
CDY55525	Canola	cytosol	80.0	5.97
CDX84977	Canola	cytosol	83.33	5.95
CDY36119	Canola	cytosol	83.33	5.92
CDY51990	Canola	cytosol	83.33	5.91
CDY65687	Canola	cytosol, mitochondrion	73.33	5.88
CDY45927	Canola	cytosol, plastid	73.33	5.87
CDY17085	Canola	cytosol, mitochondrion	76.67	5.84
CDY25863	Canola	cytosol, mitochondrion	73.33	5.84
CDY66464	Canola	cytosol	83.33	5.83
CDY42119	Canola	cytosol	83.33	5.72
CDY72036	Canola	cytosol	83.33	5.64
CDY45959	Canola	cytosol	80.0	5.59
CDY17028	Canola	mitochondrion, nucleus	73.33	5.57
CDY13570	Canola	cytosol	76.67	5.41
CDY65845	Canola	cytosol, mitochondrion	80.0	5.33
CDX87562	Canola	cytosol, mitochondrion	80.0	5.32
CDY06747	Canola	cytosol, mitochondrion	76.67	3.98
CDY35067	Canola	nucleus	40.0	3.08
CDY69989	Canola	nucleus	36.67	2.81
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	3.33	1.69
CDY17084	Canola	mitochondrion	3.33	0.49
CDY13914	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY13913	EnsemblPlantsGene:GSBRNA2T00078381001	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF73	PFAM:PF01167	ProteinID:CDY13913	ProteinID:CDY13913.1	SUPFAM:SSF54518
UniParc:UPI0004EF0A89	UniProt:A0A078FNJ0	MapMan:15.5.21	:	:	:

Description

BnaC09g39130DBnaC09g39130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNJ0]

Coordinates

chrLK032039:-:132812..133077

Molecular Weight (calculated)

3414.1 Da

IEP (calculated)

3.928

GRAVY (calculated)

0.587

Length

30 amino acids

Sequence
(BLAST)

1: MFTMDYGYPI SAFQAFAICL SSFETRIACE

Best Arabidopsis Sequence Match ( AT5G18680.1 )
(BLAST)

001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE

Arabidopsis Description

TULP11Uncharacterized protein At5g18680 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVQ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.