CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18680.1	CDX68112	AT1G75950.1	25168737
AT5G18680.1	CDX73212	AT1G75950.1	25168737
AT5G18680.1	CDX80590	AT1G75950.1	25168737
AT5G18680.1	CDX85931	AT1G75950.1	25168737
AT5G18680.1	CDX87650	AT1G75950.1	25168737
AT5G18680.1	CDY13521	AT1G75950.1	25168737
AT5G18680.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13913	Canola	endoplasmic reticulum, extracellular	8.02	100.0
CDY13914	Canola	mitochondrion	62.83	96.31
Bra002179.1-P	Field mustard	mitochondrion	100.0	93.73
AT5G18680.1	Thale cress	mitochondrion	89.3	85.86
CDY24698	Canola	mitochondrion	71.66	75.92
CDY05258	Canola	mitochondrion	72.73	75.56
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	10.16	64.41
CDY27467	Canola	cytosol	60.16	56.68
CDY55525	Canola	cytosol	59.36	55.22
CDY02510	Canola	cytosol	43.85	51.09
CDY10578	Canola	mitochondrion	5.61	50.0
CDY25159	Canola	cytosol	49.73	49.6
CDY25719	Canola	cytosol	43.58	49.39
CDY46301	Canola	cytosol	49.47	48.94
CDY65687	Canola	cytosol, mitochondrion	47.06	47.06
CDY45927	Canola	cytosol, plastid	45.99	45.87
CDY17028	Canola	mitochondrion, nucleus	48.4	45.82
CDY25863	Canola	cytosol, mitochondrion	45.99	45.62
CDY17085	Canola	cytosol, mitochondrion	47.59	45.18
CDX84977	Canola	cytosol	49.73	44.29
CDY51990	Canola	cytosol	49.47	43.74
CDY36119	Canola	cytosol	49.2	43.6
CDY66464	Canola	cytosol	50.0	43.59
CDY42119	Canola	cytosol	50.53	43.25
CDY13570	Canola	cytosol	48.66	42.82
CDY45959	Canola	cytosol	48.66	42.42
CDY72036	Canola	cytosol	50.0	42.21
CDX87562	Canola	cytosol, mitochondrion	48.93	40.58
CDY65845	Canola	cytosol, mitochondrion	48.66	40.44
CDY06747	Canola	cytosol, mitochondrion	47.59	30.8
CDY35067	Canola	nucleus	17.91	17.22
CDY69989	Canola	nucleus	17.91	17.09
CDY17084	Canola	mitochondrion	0.27	0.49

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlants:CDX92589	ProteinID:CDX92589	ProteinID:CDX92589.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00154385001	InterPro:IPR001810
InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517
PANTHER:PTHR16517:SF73	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0004EE5796	SEG:seg	:	:	:	:

Description

BnaA10g16280DTubby-like F-box protein 11 [Source:Projected from Arabidopsis thaliana (AT5G18680) UniProtKB/Swiss-Prot;Acc:Q6NPQ1]

Coordinates

chrLK031872:+:1409597..1411803

Molecular Weight (calculated)

41268.5 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.242

Length

374 amino acids

Sequence
(BLAST)

001: MTLRSLILEM RSRSHRVVHD LASAADSTPS ASSEANRWSD IPEELLREIL IRVEAADGGG WPSRRSVVAC AGVCRGWRLL MNETVAVPEI SSKLTFPISL
101: KQPGPRESLV QCFIKRNRAT QSYHLYLGLT NSLTDEGKFL LAASKLKHTT CTDYIISLRS DDMSRRSQAY VGKVRSNFLG TKFTVFDGNM LPSSTSTGPA
201: RLRKNRSYNP AKASAKVPLG SFPVSHITYE LNVLGSRGPR KMQCVMDTIP TSAMEQPRGV SSSEPSEFPY LGETPLVLSN KTPRWHEQLR CWCLNFHGRV
301: TVASVKNFQL VAAAASSGVG GGEGLSPERQ NERIILQFGK VGKDMFTMDY GYPISAFQAF AICLSSFETR IACE

Best Arabidopsis Sequence Match ( AT5G18680.1 )
(BLAST)

001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE

Arabidopsis Description

TULP11Uncharacterized protein At5g18680 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVQ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.