CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77280
CDX93698
CDX93699
CDY16470
CDY40610
CDY40611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47270.1	CDX77280	AT3G60010.1	25168737
AT1G47270.1	CDX93698	AT3G60010.1	25168737
AT1G47270.1	CDX93699	AT3G60010.1	25168737
AT1G47270.1	CDY16470	AT3G60010.1	25168737
AT1G47270.1	CDY40610	AT3G60010.1	25168737
AT1G47270.1	CDY40611	AT3G60010.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17084	Canola	mitochondrion	34.43	97.55
Bra015624.1-P	Field mustard	cytosol, mitochondrion	64.71	92.8
CDY17085	Canola	cytosol, mitochondrion	60.55	88.83
CDY65687	Canola	cytosol, mitochondrion	55.02	85.03
CDY17028	Canola	mitochondrion, nucleus	54.84	80.25
AT1G47270.1	Thale cress	nucleus	55.02	77.0
CDY13913	Canola	endoplasmic reticulum, extracellular	3.98	76.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	19.9	64.61
GSMUA_Achr2P23080_001	Banana	cytosol	14.36	61.03
GSMUA_Achr6P09030_001	Banana	cytosol	36.85	58.84
CDY25159	Canola	cytosol	37.37	57.6
CDY46301	Canola	cytosol	37.54	57.41
PGSC0003DMT400009280	Potato	cytosol	39.1	55.53
Solyc04g071750.2.1	Tomato	cytosol	38.41	55.5
PGSC0003DMT400016310	Potato	cytosol	37.89	54.61
Solyc02g085130.2.1	Tomato	cytosol	38.75	54.5
PGSC0003DMT400058090	Potato	cytosol	38.06	54.19
Solyc03g033980.2.1	Tomato	cytosol	38.06	54.19
PGSC0003DMT400040088	Potato	cytosol	38.41	54.15
KRH28692	Soybean	cytosol	38.75	54.11
VIT_04s0023g01950.t01	Wine grape	cytosol	38.58	54.0
GSMUA_Achr2P22940_001	Banana	cytosol	34.26	53.95
KRH76777	Soybean	cytosol	38.58	53.73
Solyc02g062670.2.1	Tomato	cytosol	37.89	53.28
KRH69894	Soybean	cytosol	37.54	52.42
CDY24698	Canola	mitochondrion	31.31	51.27
KRH08239	Soybean	cytosol	36.68	51.21
EES07397	Sorghum	cytosol	38.06	50.81
CDY05258	Canola	mitochondrion	31.31	50.28
Zm00001d051568_P001	Maize	cytosol	37.89	50.23
CDY66464	Canola	cytosol	37.2	50.12
Zm00001d017773_P001	Maize	cytosol	37.89	50.11
TraesCS6B01G300200.1	Wheat	cytosol	36.85	50.0
CDY10578	Canola	mitochondrion	3.63	50.0
CDY36119	Canola	cytosol	36.51	50.0
TraesCS6D01G252800.1	Wheat	cytosol	36.68	49.88
CDX84977	Canola	cytosol	36.16	49.76
HORVU6Hr1G068970.3	Barley	cytosol	36.68	49.65
CDY51990	Canola	cytosol	36.33	49.65
CDY27467	Canola	cytosol	34.08	49.62
TraesCS6A01G272800.1	Wheat	cytosol	36.68	49.42
CDY55525	Canola	cytosol	34.08	49.01
CDY72036	Canola	cytosol	37.37	48.76
CDY42119	Canola	cytosol	36.68	48.51
CDY13570	Canola	cytosol	35.64	48.47
CDY45959	Canola	cytosol	35.81	48.25
CDY02510	Canola	cytosol	26.47	47.66
CDX92589	Canola	mitochondrion	30.8	47.59
CDY25719	Canola	cytosol	26.64	46.67
CDY65845	Canola	cytosol, mitochondrion	35.29	45.33
CDX87562	Canola	cytosol, mitochondrion	35.29	45.23
CDY25863	Canola	cytosol, mitochondrion	29.24	44.83
CDY45927	Canola	cytosol, plastid	29.07	44.8
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	22.32	43.43
CDY13914	Canola	mitochondrion	17.82	42.21
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	12.63	37.06
GSMUA_Achr10P...	Banana	nucleus	12.63	34.76
Zm00001d033948_P004	Maize	cytosol	9.69	30.94
CDY35067	Canola	nucleus	13.49	20.05
CDY69989	Canola	nucleus	13.32	19.64

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.10.580.10	Gene3D:3.20.90.10	InterPro:CBS_dom	EnsemblPlants:CDY06747
ProteinID:CDY06747	ProteinID:CDY06747.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00122954001	InterPro:IPR000644	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00571
PFAM:PF01167	PFAM:PF12937	PRINTS:PR01573	ScanProsite:PS01200	PFscan:PS51371	PANTHER:PTHR16517
PANTHER:PTHR16517:SF75	SMART:SM00116	SUPFAM:SSF54518	SUPFAM:SSF54631	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EEB649	SEG:seg	:	:

Description

BnaA10g05260D

Coordinates

chrLK031972:-:785641..789786

Molecular Weight (calculated)

64203.0 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.303

Length

578 amino acids

Sequence
(BLAST)

001: MPFKKIVREL RGRNKAVGRR GRSHIAPEGS SSSSSSSPST DECSEQSIWV DLPPELLLDI IHRIESGQAL WPGRRDVVAC ASVCRSWREM TKDEVVKVPE
101: LSGLLTFPVS LKQPGPRDAP IQCFIKRERA TGIYRLYLGL SPALSGDKSK LLLSAKKVRR ATGMEFVVSL SGNDFSRSST SYIGKLRSNF LGTKFTVYEN
201: RPPLVHSETS SNRKQPPSMR VSPWVSSSPH SYKMASILYE LNVLRTRGPR RMQCIMNSIP NKKSMMDLCT GNMGGESVVK EPLVLKNKSP RWHEQLQCWC
301: LNFKGRVTVA SVKNFQLIAA AAEAGKNMNI PEEEQERVIL QFGKIGKDIF TMDYRYPISA FQAFAICLSS FDTKPMKAFV RGLIARANLE MPKIQRKWTW
401: KESAGFGGVT SPPPPPEKGL ENLTVADVLL TKDTDGGGGK VDTLISCRTN DTVFDAVKNM AKHNIGSLVV LRPGDQQYIA GIVTERDYMK KIIGAGRSSK
501: VTKVGEVMTD ESKLVSVSSG TNIIKAMQLM SENHIRHVPV IDGNIVGMIS MVDVVRAIVD HQNGELKRLN QFIKGEYY

Best Arabidopsis Sequence Match ( AT1G47270.2 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK IRVAMSLKNI VKNKYKAIGR RGRSHIAPEG SSVSSSLSTN EGLNQSIWVD LPPELLLDII QRIESEQSLW PGRRDVVACA
101: SVCKSWREMT KEVVKVPELS GLITFPISLR QPGPRDAPIQ CFIKRERATG IYRLYLGLSP ALSGDKSKLL LSAKRVRRAT GAEFVVSLSG NDFSRSSSNY
201: IGKLRSNFLG TKFTVYENQP PPFNRKLPPS MQVSPWVSSS SSSYNIASIL YELNVLRTRG PRRMQCIMHS IPISAIQEGG KIQSPTEFTN QGKKKKKPLM
301: DFCSGNLGGE SVIKEPLILK NKSPRWHEQL QCWCLNFKGR VTVASVKNFQ LVAAAAEAGK NMNIPEEEQD RVILQFGKIG KDIFTMDYRY PISAFQAFAI
401: CLSSFDTKPV CE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.