Factsheet for GSMUA_Achr10P20530_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	74.76	79.7
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	56.19	39.73
GSMUA_Achr6P09030_001	Banana	cytosol	48.57	28.18
Zm00001d033948_P004	Maize	cytosol	23.33	27.07
GSMUA_Achr2P22940_001	Banana	cytosol	44.29	25.34
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	36.19	24.68
KRH28692	Soybean	cytosol	44.76	22.71
KRH76777	Soybean	cytosol	44.29	22.41
EES07397	Sorghum	cytosol	46.19	22.4
TraesCS6D01G252800.1	Wheat	cytosol	45.24	22.35
TraesCS6B01G300200.1	Wheat	cytosol	45.24	22.3
TraesCS6A01G272800.1	Wheat	cytosol	45.24	22.14
VIT_04s0023g01950.t01	Wine grape	cytosol	43.33	22.03
Os02t0705300-01	Rice	cytosol	44.76	21.96
GSMUA_Achr3P22480_001	Banana	cytosol	36.19	21.84
HORVU6Hr1G068970.3	Barley	cytosol	44.29	21.78
KRH69894	Soybean	cytosol	42.86	21.74
Zm00001d051568_P001	Maize	cytosol	44.76	21.56
KRH08239	Soybean	cytosol	41.9	21.26
Solyc02g085130.2.1	Tomato	cytosol	41.43	21.17
VIT_18s0001g12660.t01	Wine grape	cytosol	41.9	21.15
PGSC0003DMT400009280	Potato	cytosol	40.95	21.13
GSMUA_Achr8P07950_001	Banana	mitochondrion	38.1	21.05
Zm00001d017773_P001	Maize	cytosol	43.81	21.05
Solyc03g033980.2.1	Tomato	cytosol	40.48	20.94
PGSC0003DMT400058090	Potato	cytosol	40.48	20.94
Solyc04g071750.2.1	Tomato	cytosol	39.52	20.75
CDY25159	Canola	cytosol	36.67	20.53
PGSC0003DMT400016310	Potato	cytosol	39.05	20.45
CDY46301	Canola	cytosol	36.67	20.37
Bra039620.1-P	Field mustard	cytosol	36.67	20.37
Solyc02g062670.2.1	Tomato	cytosol	39.52	20.19
CDY65687	Canola	cytosol, mitochondrion	35.71	20.05
PGSC0003DMT400040088	Potato	cytosol	39.05	20.0
KRH15179	Soybean	cytosol	39.05	19.39
AT2G18280.2	Thale cress	cytosol	35.71	19.04
CDY17028	Canola	mitochondrion, nucleus	35.71	18.99
GSMUA_Achr8P32840_001	Banana	mitochondrion	36.67	18.73
GSMUA_Achr1P11290_001	Banana	cytosol	36.19	18.72
Bra040862.1-P	Field mustard	mitochondrion, nucleus	35.24	18.69
GSMUA_Achr3P17440_001	Banana	cytosol	35.71	18.61
KRH05837	Soybean	mitochondrion	39.52	18.28
Bra015624.1-P	Field mustard	cytosol, mitochondrion	34.76	18.11
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	36.19	17.76
AT1G47270.1	Thale cress	nucleus	34.76	17.68
GSMUA_Achr11P...	Banana	cytosol	31.9	16.14
GSMUA_Achr10P...	Banana	mitochondrion	27.62	15.68
GSMUA_Achr4P10540_001	Banana	mitochondrion	28.1	15.36
GSMUA_Achr4P01150_001	Banana	cytosol	22.38	14.73
GSMUA_Achr3P31460_001	Banana	cytosol	22.38	14.69
GSMUA_Achr7P25250_001	Banana	cytosol	21.43	14.15
CDY06747	Canola	cytosol, mitochondrion	34.76	12.63
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	12.86	9.15
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	10.48	5.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	4.76	5.62
GSMUA_Achr2P23080_001	Banana	cytosol	1.9	2.94
CDY10578	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G20530_001	EnsemblPlants:GSMUA_Achr10P20530_001	EnsemblPlants:GSMUA_Achr10T20530_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0RJX8	PFAM:PF00646	PFAM:PF01167	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75
SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0002952BC4	SEG:seg

Description

Tubby-like F-box protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr10G20530_001]

Coordinates

chr10:-:26472847..26474065

Molecular Weight (calculated)

23744.5 Da

IEP (calculated)

10.935

GRAVY (calculated)

-0.615

Length

210 amino acids

Sequence
(BLAST)

001: MSFKSLVREL KEMRDGMGSM SRRGGRGGGA PEGTMTGHGR GCDQHPWSHQ RDLEQRHQQQ QQGRWANLPP ELLLDVIRRV EESEVSWPAR RHVLACAAVC
101: HSWRDITKEV VKPPQQCGRI TFPISLKQPG PRDNPIQCFI RRERATSTFR LYLGLSPSLH GQNDKLLLAA RKIRRATSTD FVISLTADDF SRASSSYVGK
201: VRQVMPSAFL

Best Arabidopsis Sequence Match ( AT1G76900.1 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.