Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 34.13 | 79.78 |
| GSMUA_Achr2P23080_001 | Banana | cytosol | 25.24 | 77.21 |
| VIT_01s0010g01060.t01 | Wine grape | mitochondrion | 9.62 | 74.07 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 72.6 | 73.12 |
| VIT_12s0028g00190.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 10.1 | 71.19 |
| KRH15179 | Soybean | cytosol | 72.12 | 70.92 |
| GSMUA_Achr6P09030_001 | Banana | cytosol | 61.06 | 70.17 |
| TraesCS6A01G272800.1 | Wheat | cytosol | 68.03 | 65.97 |
| TraesCS6B01G300200.1 | Wheat | cytosol | 67.55 | 65.96 |
| GSMUA_Achr2P22940_001 | Banana | cytosol | 58.17 | 65.94 |
| TraesCS6D01G252800.1 | Wheat | cytosol | 67.31 | 65.88 |
| KRH05837 | Soybean | mitochondrion | 71.63 | 65.64 |
| HORVU6Hr1G068970.3 | Barley | cytosol | 67.07 | 65.34 |
| EES07397 | Sorghum | cytosol | 65.62 | 63.05 |
| Zm00001d017773_P001 | Maize | cytosol | 65.87 | 62.7 |
| Zm00001d051568_P001 | Maize | cytosol | 65.62 | 62.61 |
| VIT_05s0020g01930.t01 | Wine grape | cytosol | 49.76 | 59.14 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 41.59 | 58.25 |
| VIT_07s0104g01290.t01 | Wine grape | cytosol | 56.49 | 58.02 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 55.77 | 54.72 |
| VIT_18s0072g00630.t01 | Wine grape | cytosol | 55.29 | 54.12 |
| GSMUA_Achr2P23070_001 | Banana | cytosol, mitochondrion | 22.6 | 47.72 |
| VIT_19s0014g01250.t01 | Wine grape | mitochondrion | 45.91 | 47.63 |
| GSMUA_Achr10P... | Banana | nucleus | 21.15 | 41.9 |
| VIT_01s0010g01050.t01 | Wine grape | cytosol | 12.26 | 37.78 |
| Zm00001d033948_P004 | Maize | cytosol | 14.9 | 34.25 |
| VIT_00s0426g00050.t01 | Wine grape | extracellular | 12.74 | 33.33 |
| Os03t0348500-00 | Rice | extracellular | 9.62 | 23.67 |
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 20.67 | 22.81 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100253937 | wikigene:100253937 | MapMan:15.5.21 | Gene3D:3.20.90.10 | ProteinID:CCB45956 |
| ProteinID:CCB45956.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6H054 | EMBL:FN595227 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001810 | InterPro:IPR025659 |
| EntrezGene:LOC100253937 | wikigene:LOC100253937 | PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01200 |
| ScanProsite:PS01201 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF75 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI00015C7D5C | ArrayExpress:VIT_18s0001g12660 | EnsemblPlantsGene:VIT_18s0001g12660 | EnsemblPlants:VIT_18s0001g12660.t01 |
| RefSeq:XP_002282152 | RefSeq:XP_002282152.1 | : | : | : | : |
Description
Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F6H054]
Coordinates
chr18:-:10828053..10830740
Molecular Weight (calculated)
46517.6 Da
IEP (calculated)
9.907
GRAVY (calculated)
-0.468
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MHFKSIVREL RDMRDSIGNS SRRRAEGKHT NRRGRSHIAP EGSPSSSALF QQQSQWANMP PELLLDIIQR VEAAEASWPA RRDVVSCGSV CRSWRDITKE
101: IVKTPEQCGC LTFPISLKQP GPRESQIQCF IKRERATSTF RLYLGLSPAL SGDASKLLLA ARKIRRATST EFVISLLGDD FSRATNAYVG KLKSNFLGTK
201: FTIYDSQPPH DPAVQSNCQS NGRLHSKQGS TRSPSGNYNV ATISYELNVL RTRGPRRMHC TMHWIPISAI QEGGTAPTPM TFAKCQKDQF PQSADPKGKN
301: PLIEFSSNSL AETPESIQDT RNPLVLKNKA PRWHEQLQCW CLNFKGRVTV ASVKNFQLVA AVEPCQNVSV AEQEKVILQF GKIGKDIFTM DYRYPLSAFQ
401: AFAICLSSFD TKPACE
101: IVKTPEQCGC LTFPISLKQP GPRESQIQCF IKRERATSTF RLYLGLSPAL SGDASKLLLA ARKIRRATST EFVISLLGDD FSRATNAYVG KLKSNFLGTK
201: FTIYDSQPPH DPAVQSNCQS NGRLHSKQGS TRSPSGNYNV ATISYELNVL RTRGPRRMHC TMHWIPISAI QEGGTAPTPM TFAKCQKDQF PQSADPKGKN
301: PLIEFSSNSL AETPESIQDT RNPLVLKNKA PRWHEQLQCW CLNFKGRVTV ASVKNFQLVA AVEPCQNVSV AEQEKVILQF GKIGKDIFTM DYRYPLSAFQ
401: AFAICLSSFD TKPACE
001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE
Arabidopsis Description
TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.