Factsheet for VIT_05s0020g01930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01060.t01	Wine grape	mitochondrion	12.86	83.33
KRH21017	Soybean	mitochondrion	68.86	83.1
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	13.14	77.97
KRH11270	Soybean	cytosol	82.29	74.81
KRH50928	Soybean	cytosol	71.14	69.36
VIT_07s0104g01290.t01	Wine grape	cytosol	79.43	68.64
PGSC0003DMT400027634	Potato	cytosol	73.71	66.49
KRH02194	Soybean	cytosol	70.0	62.5
Solyc01g067680.2.1	Tomato	cytosol	40.57	57.03
VIT_18s0072g00630.t01	Wine grape	cytosol	64.0	52.71
VIT_12s0055g00460.t01	Wine grape	mitochondrion	62.86	51.89
VIT_04s0023g01950.t01	Wine grape	cytosol	60.29	51.09
VIT_18s0001g12660.t01	Wine grape	cytosol	59.14	49.76
VIT_01s0010g01050.t01	Wine grape	cytosol	18.29	47.41
VIT_19s0014g01250.t01	Wine grape	mitochondrion	53.43	46.63
KRH21016	Soybean	cytosol	12.86	45.0
VIT_00s0426g00050.t01	Wine grape	extracellular	18.86	41.51
VIT_09s0018g01630.t01	Wine grape	cytosol	22.29	20.69

Protein Annotations

EntrezGene:100258055	wikigene:100258055	MapMan:15.5.21	Gene3D:3.20.90.10	ProteinID:CBI26117	ProteinID:CBI26117.3
UniProt:D7T6J6	InterPro:F-box_dom	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	EntrezGene:LOC100258055	wikigene:LOC100258055
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF73	SUPFAM:SSF54518	TIGR:TC61898	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0001BE2B77	ArrayExpress:VIT_05s0020g01930	EnsemblPlantsGene:VIT_05s0020g01930	EnsemblPlants:VIT_05s0020g01930.t01	unigene:Vvi.12659	RefSeq:XP_002276906
RefSeq:XP_002276906.1	SEG:seg	:	:	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:D7T6J6]

Coordinates

chr5:-:3626919..3630035

Molecular Weight (calculated)

39121.1 Da

IEP (calculated)

9.829

GRAVY (calculated)

-0.301

Length

350 amino acids

Sequence
(BLAST)

001: MPEELLREVL IRIEASDTTW PSRKNVVACA GVCKSWRRIT QELVKTPEVS ASLTFPISVK QPGPRESLLK CFIKRNRSAQ TYYLYLSLTN ALTEDGKFLL
101: AARKYRRTTC TDYIISLYAD DMSKGSSTYI GKLRSNFLGT KFTVYDGQPP HSGAKIMRNR STRLVGLKQV SPRVPAGSYP VAHISYEVNV LGSRGPRRMQ
201: CSMDSIPASA IEPGGVTPTQ TEIRLSNPDV FPSFSFFRSK SHSVENSLSE PLADKKDGAL VLKNKAPRWH EQLQCWCLNF HGRVTVASVK NFQLVASPED
301: GPAGQQHEKI ILQFGKVGKD LFTMDYRYPI SAFQAFAICL SSFDTKIACE

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.