Factsheet for VIT_19s0014g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53320.1	VIT_18s0001g14860.t01	AT5G42190.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02510	Canola	cytosol	64.84	81.0
CDY25719	Canola	cytosol	64.84	78.79
GSMUA_Achr7P25250_001	Banana	cytosol	61.1	77.04
KRH27356	Soybean	mitochondrion	71.07	75.4
KRH21960	Soybean	mitochondrion	71.07	74.8
GSMUA_Achr3P31460_001	Banana	cytosol	59.35	74.38
GSMUA_Achr4P01150_001	Banana	cytosol	58.85	73.98
PGSC0003DMT400018209	Potato	mitochondrion	70.32	73.06
AT1G53320.1	Thale cress	mitochondrion	68.58	72.56
Solyc07g062390.2.1	Tomato	mitochondrion	69.58	72.28
Bra030942.1-P	Field mustard	mitochondrion	69.33	70.92
CDY25863	Canola	cytosol, mitochondrion	66.08	70.29
Bra041095.1-P	Field mustard	cytosol, mitochondrion	66.08	70.29
CDY45927	Canola	cytosol, plastid	65.34	69.87
VIT_01s0010g01060.t01	Wine grape	mitochondrion	8.98	66.67
TraesCS3B01G304600.1	Wheat	cytosol	58.35	66.67
TraesCS3D01G270500.1	Wheat	cytosol	58.35	65.92
TraesCS3A01G270800.1	Wheat	cytosol	58.1	65.63
EES03425	Sorghum	plastid	58.35	65.0
Os01t0674500-01	Rice	cytosol	57.61	64.89
HORVU3Hr1G061930.1	Barley	cytosol	57.36	64.61
Zm00001d011578_P003	Maize	nucleus	57.61	64.53
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	9.48	64.41
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	47.13	64.07
Os05t0514300-01	Rice	mitochondrion	59.1	63.71
GSMUA_Achr10P...	Banana	mitochondrion	58.35	63.24
Zm00001d038691_P001	Maize	mitochondrion	57.86	63.22
EES18499	Sorghum	mitochondrion	58.35	62.9
Os05t0560400-00	Rice	cytosol	54.61	62.22
GSMUA_Achr4P10540_001	Banana	mitochondrion	59.35	61.98
TraesCS1D01G336400.1	Wheat	mitochondrion	57.61	61.44
TraesCS1A01G333900.1	Wheat	mitochondrion	56.61	60.86
TraesCS1B01G347200.1	Wheat	mitochondrion	56.36	60.59
Zm00001d043895_P003	Maize	cytosol	54.86	58.2
HORVU1Hr1G076900.1	Barley	cytosol	55.36	57.66
OQU78419	Sorghum	cytosol	51.12	54.38
VIT_05s0020g01930.t01	Wine grape	cytosol	46.63	53.43
Os01t0759100-01	Rice	cytosol, plastid	48.63	52.99
VIT_07s0104g01290.t01	Wine grape	cytosol	49.88	49.38
VIT_04s0023g01950.t01	Wine grape	cytosol	47.88	46.49
VIT_18s0001g12660.t01	Wine grape	cytosol	47.63	45.91
VIT_12s0055g00460.t01	Wine grape	mitochondrion	47.63	45.05
VIT_18s0072g00630.t01	Wine grape	cytosol	47.38	44.71
VIT_01s0010g01050.t01	Wine grape	cytosol	13.97	41.48
VIT_00s0426g00050.t01	Wine grape	extracellular	14.46	36.48
HORVU0Hr1G001350.2	Barley	cytosol	31.17	33.51
VIT_09s0018g01630.t01	Wine grape	cytosol	18.2	19.36

Protein Annotations

EntrezGene:100854941	wikigene:100854941	MapMan:15.5.21	Gene3D:3.20.90.10	ProteinID:CCB46245	ProteinID:CCB46245.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H2M7	EMBL:FN595229	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150
GO:GO:0008289	GO:GO:0009536	GO:GO:0009555	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620
GO:GO:0016020	GO:GO:0035091	GO:GO:0044212	InterPro:IPR001810	InterPro:IPR025659	EntrezGene:LOC100854941
wikigene:LOC100854941	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	SUPFAM:SSF81383	TIGR:TC63252	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000198588A	ArrayExpress:VIT_19s0014g01250	EnsemblPlantsGene:VIT_19s0014g01250	EnsemblPlants:VIT_19s0014g01250.t01
unigene:Vvi.6639	RefSeq:XP_003634665	RefSeq:XP_003634665.1	RefSeq:XP_003634666	RefSeq:XP_003634666.1	SEG:seg

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F6H2M7]

Coordinates

chr19:+:1360642..1367222

Molecular Weight (calculated)

44622.6 Da

IEP (calculated)

9.432

GRAVY (calculated)

-0.574

Length

401 amino acids

Sequence
(BLAST)

001: MSLRRSILSR RTFALSKSFK EFRTLDSSES RSEPALRPRI VDDDVSDEEE EDSGDGAAGD SGIRRVDSGR GDSWSTMLPE LLGEIIQRVE ASENRWPTRR
101: NVVSCACVCK RWRDITREVV RSRLDSGQIT FPSCLKQPGP RNSEHQCLIK RNKKNSTFYL YLALSSSFTD KGKFLLAARR YRHGAHTEYI ISLDADDISQ
201: GSNAYVGKLR SDFLGTNFAI YDSQPPHSGA KPSSSRAGRR FASKQISPQV PAGNFEVGQV SYKFNLLKSR GPRRMVCSLR CPSSGETANN KSPDNSDLKK
301: PDPAAPGCSI LKNKAPRWHE HLQCWCLNFH GRVTVASVKN FQLVATVDQS QPGGKGDEET VLLQFGKVGN DTFTMDYRQP LSAFLAFAIC LTSFGTKLAC
401: E

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.