Factsheet for VIT_04s0023g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	35.59	82.58
GSMUA_Achr2P23080_001	Banana	cytosol	26.88	81.62
Solyc04g071750.2.1	Tomato	cytosol	77.24	79.75
PGSC0003DMT400016310	Potato	cytosol	77.0	79.3
PGSC0003DMT400058090	Potato	cytosol	77.48	78.82
Solyc03g033980.2.1	Tomato	cytosol	77.24	78.57
KRH69894	Soybean	cytosol	78.69	78.5
KRH76777	Soybean	cytosol	78.21	77.83
KRH08239	Soybean	cytosol	77.97	77.78
PGSC0003DMT400009280	Potato	cytosol	76.51	77.64
PGSC0003DMT400040088	Potato	cytosol	76.76	77.32
Solyc02g085130.2.1	Tomato	cytosol	76.76	77.13
KRH28692	Soybean	cytosol	77.24	77.05
Solyc02g062670.2.1	Tomato	cytosol	75.79	76.16
GSMUA_Achr6P09030_001	Banana	cytosol	66.34	75.69
VIT_18s0001g12660.t01	Wine grape	cytosol	73.12	72.6
VIT_01s0010g01060.t01	Wine grape	mitochondrion	9.2	70.37
TraesCS6B01G300200.1	Wheat	cytosol	71.67	69.48
TraesCS6D01G252800.1	Wheat	cytosol	71.43	69.41
TraesCS6A01G272800.1	Wheat	cytosol	71.91	69.23
HORVU6Hr1G068970.3	Barley	cytosol	71.19	68.85
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	9.69	67.8
EES07397	Sorghum	cytosol	70.46	67.21
GSMUA_Achr2P22940_001	Banana	cytosol	59.56	67.03
CDY46301	Canola	cytosol	61.02	66.67
Bra039620.1-P	Field mustard	cytosol	61.02	66.67
CDY25159	Canola	cytosol	60.29	66.4
Zm00001d051568_P001	Maize	cytosol	69.98	66.28
Zm00001d017773_P001	Maize	cytosol	69.73	65.9
AT2G18280.2	Thale cress	cytosol	61.99	64.97
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	43.58	60.61
VIT_05s0020g01930.t01	Wine grape	cytosol	51.09	60.29
CDY65687	Canola	cytosol, mitochondrion	53.75	59.36
VIT_07s0104g01290.t01	Wine grape	cytosol	58.11	59.26
AT1G47270.1	Thale cress	nucleus	58.84	58.84
CDY17028	Canola	mitochondrion, nucleus	56.17	58.73
Bra040862.1-P	Field mustard	mitochondrion, nucleus	56.17	58.59
Bra015624.1-P	Field mustard	cytosol, mitochondrion	57.14	58.56
CDY10578	Canola	mitochondrion	5.81	57.14
VIT_12s0055g00460.t01	Wine grape	mitochondrion	57.14	55.66
VIT_18s0072g00630.t01	Wine grape	cytosol	56.66	55.06
VIT_19s0014g01250.t01	Wine grape	mitochondrion	46.49	47.88
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	22.76	47.72
GSMUA_Achr10P...	Banana	nucleus	22.03	43.33
VIT_01s0010g01050.t01	Wine grape	cytosol	13.32	40.74
CDY06747	Canola	cytosol, mitochondrion	54.0	38.58
VIT_00s0426g00050.t01	Wine grape	extracellular	14.29	37.11
Zm00001d033948_P004	Maize	cytosol	15.98	36.46
VIT_09s0018g01630.t01	Wine grape	cytosol	23.0	25.2

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100261485	wikigene:100261485	MapMan:15.5.21	Gene3D:3.20.90.10	ProteinID:CCB44442
ProteinID:CCB44442.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6GWV6	EMBL:FN594959	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0008150	GO:GO:0008289	GO:GO:0009536
GO:GO:0009605	GO:GO:0009607	GO:GO:0009620	GO:GO:0016020	GO:GO:0035091	InterPro:IPR001810
InterPro:IPR025659	EntrezGene:LOC100261485	wikigene:LOC100261485	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0001983102	ArrayExpress:VIT_04s0023g01950	EnsemblPlantsGene:VIT_04s0023g01950
EnsemblPlants:VIT_04s0023g01950.t01	unigene:Vvi.5847	RefSeq:XP_002265804	RefSeq:XP_002265804.1	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F6GWV6]

Coordinates

chr4:-:18518742..18520717

Molecular Weight (calculated)

46514.7 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.399

Length

413 amino acids

Sequence
(BLAST)

001: MSFKSIVREL KEMKDGIGNI SRRGVEGKHW RRRTRSYIAP DQGPLSGALQ QGQWANLPPE LLLDIIQRVE ESETSWPARN VVVFCASVCR SWREITKEIV
101: KTPEECGRLT FPISLKQPGP RDSPIQCFIR RDRATSTYLL YFGLTPSEGQ SDKLLLAARR IRRPTSTDFV ISLVADDFSR ASNTYVGKLR SNFLGTKFTI
201: YDSQPPYDTA VQPNSRSSRR FHSKQVSPRV PACNYSVATI SYELNVLRTR GPRRMQCTMH SIPISSIQEG GTAPTPTSFP QPFDEQFSPS PCLRKKDPVT
301: DICSTSLSEP LVPVQGSGDP LILKNKAPRW HEHLQCWCLN FRGRVTVASV KNFQLVASVE PSHNVSAVEQ DKVILQFGKI GKDIFTMDYR YPLSAFQAFA
401: ICLSSFDTKP ACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.