Factsheet for GSMUA_AchrUn_randomP23310_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	49.49	74.62
GSMUA_Achr10P...	Banana	nucleus	39.73	56.19
GSMUA_Achr6P09030_001	Banana	cytosol	59.6	48.9
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.96	48.31
VIT_04s0023g01950.t01	Wine grape	cytosol	60.61	43.58
TraesCS6D01G252800.1	Wheat	cytosol	61.62	43.06
TraesCS6B01G300200.1	Wheat	cytosol	61.62	42.96
TraesCS6A01G272800.1	Wheat	cytosol	61.95	42.89
GSMUA_Achr2P22940_001	Banana	cytosol	52.86	42.78
Os02t0705300-01	Rice	cytosol	61.62	42.76
HORVU6Hr1G068970.3	Barley	cytosol	60.94	42.39
VIT_18s0001g12660.t01	Wine grape	cytosol	58.25	41.59
EES07397	Sorghum	cytosol	59.93	41.11
KRH69894	Soybean	cytosol	56.57	40.58
Zm00001d051568_P001	Maize	cytosol	59.26	40.37
Solyc04g071750.2.1	Tomato	cytosol	54.21	40.25
GSMUA_Achr3P22480_001	Banana	cytosol	47.14	40.23
Zm00001d017773_P001	Maize	cytosol	58.92	40.05
KRH76777	Soybean	cytosol	55.89	40.0
Solyc02g062670.2.1	Tomato	cytosol	55.22	39.9
Solyc02g085130.2.1	Tomato	cytosol	54.88	39.66
KRH08239	Soybean	cytosol	55.22	39.61
PGSC0003DMT400040088	Potato	cytosol	54.55	39.51
PGSC0003DMT400016310	Potato	cytosol	53.2	39.4
KRH28692	Soybean	cytosol	54.88	39.37
GSMUA_Achr8P07950_001	Banana	mitochondrion	50.17	39.21
PGSC0003DMT400009280	Potato	cytosol	53.54	39.07
Solyc03g033980.2.1	Tomato	cytosol	53.2	38.92
PGSC0003DMT400058090	Potato	cytosol	52.86	38.67
KRH15179	Soybean	cytosol	54.55	38.3
GSMUA_Achr2P23080_001	Banana	cytosol	16.84	36.76
GSMUA_Achr1P11290_001	Banana	cytosol	50.17	36.7
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	37.71	36.36
GSMUA_Achr8P32840_001	Banana	mitochondrion	49.49	35.77
KRH05837	Soybean	mitochondrion	54.21	35.46
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	49.83	34.58
GSMUA_Achr3P17440_001	Banana	cytosol	46.8	34.49
Bra039620.1-P	Field mustard	cytosol	43.77	34.39
CDY46301	Canola	cytosol	43.77	34.39
Bra015624.1-P	Field mustard	cytosol, mitochondrion	46.46	34.24
CDY17028	Canola	mitochondrion, nucleus	45.45	34.18
AT1G47270.1	Thale cress	nucleus	47.47	34.14
CDY25159	Canola	cytosol	43.1	34.13
Bra040862.1-P	Field mustard	mitochondrion, nucleus	45.45	34.09
CDY65687	Canola	cytosol, mitochondrion	42.42	33.69
AT2G18280.2	Thale cress	cytosol	44.44	33.5
GSMUA_Achr4P01150_001	Banana	cytosol	35.35	32.92
GSMUA_Achr3P31460_001	Banana	cytosol	35.02	32.5
GSMUA_Achr7P25250_001	Banana	cytosol	34.68	32.39
Zm00001d033948_P004	Maize	cytosol	18.52	30.39
GSMUA_Achr10P...	Banana	mitochondrion	37.71	30.27
GSMUA_Achr4P10540_001	Banana	mitochondrion	39.06	30.21
GSMUA_Achr11P...	Banana	cytosol	41.08	29.4
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	26.94	27.12
CDY06747	Canola	cytosol, mitochondrion	43.43	22.32
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.46	10.08
CDY10578	Canola	mitochondrion	1.01	7.14

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_AchrUn_randomG23310_001	EnsemblPlants:GSMUA_AchrUn_randomP23310_001	EnsemblPlants:GSMUA_AchrUn_randomT23310_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0UBN9	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517
PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0002961B66
SEG:seg	:	:	:	:	:

Description

Tubby-like F-box protein 5 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23310_001]

Coordinates

chrchrUn_random:+:113942183..113945568

Molecular Weight (calculated)

33220.8 Da

IEP (calculated)

8.974

GRAVY (calculated)

-0.411

Length

297 amino acids

Sequence
(BLAST)

001: MSFKSLVREL RDGIGSMSRR GGGAMEGMMT AHSRGCAPHP QELEEQQQQG RWANLPPELL LDVIQRVEAS EVAWPERRHV LACAAVCRSW RNITKEVVRS
101: PEQCGQITFP FPLKQPGPRD HPIQCFIRRE SDVDLLLVPG SDPLSNFLAT KFTVYDSEPP FDAAVSSSNR SNRRIHSRQV SSRVPAGNYN IATISYELNI
201: LRTRGPRRMQ CMMHSIPISS IQEGGSVPAP SSFIHSVDQR LSSLPVVKGK EPVIGFSSTS LNESNAPVQI NVESLILKNK APRWHEQLQC WCLNFRG

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.