Factsheet for PGSC0003DMT400016310

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071750.2.1	Tomato	cytosol	97.76	98.0
PGSC0003DMT400058090	Potato	cytosol	94.02	92.86
PGSC0003DMT400040088	Potato	cytosol	81.8	80.0
PGSC0003DMT400009280	Potato	cytosol	81.05	79.85
VIT_04s0023g01950.t01	Wine grape	cytosol	79.3	77.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	33.42	75.28
GSMUA_Achr2P23080_001	Banana	cytosol	25.19	74.26
KRH76777	Soybean	cytosol	75.31	72.77
KRH69894	Soybean	cytosol	74.31	71.98
KRH28692	Soybean	cytosol	74.31	71.98
KRH08239	Soybean	cytosol	73.82	71.5
GSMUA_Achr6P09030_001	Banana	cytosol	61.6	68.23
CDY25159	Canola	cytosol	59.85	64.0
TraesCS6A01G272800.1	Wheat	cytosol	68.33	63.87
TraesCS6B01G300200.1	Wheat	cytosol	67.83	63.85
TraesCS6D01G252800.1	Wheat	cytosol	67.58	63.76
Bra039620.1-P	Field mustard	cytosol	59.85	63.49
CDY46301	Canola	cytosol	59.85	63.49
HORVU6Hr1G068970.3	Barley	cytosol	67.33	63.23
Zm00001d051568_P001	Maize	cytosol	67.83	62.39
EES07397	Sorghum	cytosol	67.33	62.36
Zm00001d017773_P001	Maize	cytosol	67.83	62.24
AT2G18280.2	Thale cress	cytosol	61.1	62.18
GSMUA_Achr2P22940_001	Banana	cytosol	56.11	61.31
CDY65687	Canola	cytosol, mitochondrion	54.86	58.82
Bra040862.1-P	Field mustard	mitochondrion, nucleus	57.36	58.08
CDY17028	Canola	mitochondrion, nucleus	56.86	57.72
Bra015624.1-P	Field mustard	cytosol, mitochondrion	57.86	57.57
AT1G47270.1	Thale cress	nucleus	57.61	55.93
CDY10578	Canola	mitochondrion	5.74	54.76
PGSC0003DMT400002858	Potato	mitochondrion	57.11	53.76
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	39.4	53.2
PGSC0003DMT400029513	Potato	cytosol	52.12	52.78
PGSC0003DMT400076537	Potato	cytosol	55.86	52.46
PGSC0003DMT400061933	Potato	cytosol	54.61	51.41
PGSC0003DMT400027634	Potato	cytosol	48.63	50.26
PGSC0003DMT400018209	Potato	mitochondrion	46.38	48.19
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	19.7	40.1
GSMUA_Achr10P...	Banana	nucleus	20.45	39.05
CDY06747	Canola	cytosol, mitochondrion	54.61	37.89
Zm00001d033948_P004	Maize	cytosol	15.71	34.81
PGSC0003DMT400036862	Potato	nucleus	21.7	20.91

Protein Annotations

EntrezGene:102584812	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1A7F7	PFAM:PF00646
PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400006371	PGSC:PGSC0003DMG400006371	EnsemblPlants:PGSC0003DMT400016310	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002959AB2	RefSeq:XP_006363440.1	RefSeq:XP_015158933.1	:

Description

Phosphoric diester hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400006371]

Coordinates

chr4:+:60573846..60577736

Molecular Weight (calculated)

44933.8 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.304

Length

401 amino acids

Sequence
(BLAST)

001: MSFKSIVREL KEMKNGIGSI SRRREVEGRH WRNRTRSHIA PDVVPFDPNQ QGQWANIPPE LLLDIVHRVE ESETSFPART AVVYCASVCK SWREVTKEIV
101: KTPEECGRLT FPISLKQPGP RESPIHCFIK RDIANSVFRL YFGLTPSEDV SDKLLLAAKR IRRATSTDFV ISLVSDDFSR ASSTYVGKLR SNFLGTKFTI
201: YDSQPPSDVA IQHRGRLSRR FSAKQVSPTV SACNYSIATV SYELNVLRTR GPRRMHCAMH SIPFSSIQEG GSAPTPTSFP QSFDERPSKA KVPAVNISSS
301: VSVPSREPLV LKNKAPRWHE QLQCWCLNFK GRVTVASVKN FQLAAAVDPS HNIPAAVQET TILQFGKIGK DIFTMDYCYP LSAFQAFAIC LSSFDTKPAC
401: E

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.