Factsheet for PGSC0003DMT400018209

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062390.2.1	Tomato	mitochondrion	96.89	96.89
CDY02510	Canola	cytosol	61.4	73.83
GSMUA_Achr7P25250_001	Banana	cytosol	60.36	73.27
CDY25719	Canola	cytosol	61.4	71.82
KRH27356	Soybean	mitochondrion	69.69	71.16
KRH21960	Soybean	mitochondrion	69.95	70.87
VIT_19s0014g01250.t01	Wine grape	mitochondrion	73.06	70.32
GSMUA_Achr3P31460_001	Banana	cytosol	58.29	70.31
GSMUA_Achr4P01150_001	Banana	cytosol	56.48	68.34
AT1G53320.1	Thale cress	mitochondrion	66.84	68.07
CDY45927	Canola	cytosol, plastid	65.28	67.2
Bra041095.1-P	Field mustard	cytosol, mitochondrion	65.03	66.58
CDY25863	Canola	cytosol, mitochondrion	65.03	66.58
Bra030942.1-P	Field mustard	mitochondrion	66.84	65.82
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	49.22	64.41
TraesCS3B01G304600.1	Wheat	cytosol	57.25	62.96
TraesCS3D01G270500.1	Wheat	cytosol	57.51	62.54
TraesCS3A01G270800.1	Wheat	cytosol	57.51	62.54
Zm00001d038691_P001	Maize	mitochondrion	58.55	61.58
Os01t0674500-01	Rice	cytosol	56.74	61.52
Os05t0560400-00	Rice	cytosol	55.96	61.36
HORVU3Hr1G061930.1	Barley	cytosol	56.48	61.24
GSMUA_Achr10P...	Banana	mitochondrion	58.55	61.08
EES18499	Sorghum	mitochondrion	58.81	61.02
GSMUA_Achr4P10540_001	Banana	mitochondrion	60.62	60.94
Os05t0514300-01	Rice	mitochondrion	58.55	60.75
EES03425	Sorghum	plastid	56.48	60.56
Zm00001d011578_P003	Maize	nucleus	55.96	60.34
TraesCS1B01G347200.1	Wheat	mitochondrion	56.48	58.45
TraesCS1A01G333900.1	Wheat	mitochondrion	56.22	58.18
TraesCS1D01G336400.1	Wheat	mitochondrion	56.48	57.98
Zm00001d043895_P003	Maize	cytosol	53.37	54.5
HORVU1Hr1G076900.1	Barley	cytosol	53.89	54.03
Os01t0759100-01	Rice	cytosol, plastid	50.0	52.45
OQU78419	Sorghum	cytosol	50.78	51.99
PGSC0003DMT400027634	Potato	cytosol	48.96	48.71
PGSC0003DMT400076537	Potato	cytosol	51.55	46.6
PGSC0003DMT400016310	Potato	cytosol	48.19	46.38
PGSC0003DMT400029513	Potato	cytosol	47.41	46.21
PGSC0003DMT400058090	Potato	cytosol	48.19	45.81
PGSC0003DMT400002858	Potato	mitochondrion	50.26	45.54
PGSC0003DMT400040088	Potato	cytosol	48.19	45.37
PGSC0003DMT400061933	Potato	cytosol	50.0	45.31
PGSC0003DMT400009280	Potato	cytosol	47.67	45.21
HORVU0Hr1G001350.2	Barley	cytosol	32.38	33.51
PGSC0003DMT400036862	Potato	nucleus	21.24	19.71

Protein Annotations

EntrezGene:102583624	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0007275
GO:GO:0008150	GO:GO:0009536	GO:GO:0009555	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620
GO:GO:0016020	GO:GO:0044212	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1AA85	PFAM:PF00646
PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400007069	PGSC:PGSC0003DMG400007069	EnsemblPlants:PGSC0003DMT400018209	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000296CFAE	RefSeq:XP_006348317.1	SEG:seg	:

Description

Tubby; Cyclin-like F-box [Source:PGSC_GENE;Acc:PGSC0003DMG400007069]

Coordinates

chr7:+:52530121..52535101

Molecular Weight (calculated)

43136.4 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.472

Length

386 amino acids

Sequence
(BLAST)

001: MSLRRSFLSR RIISRSFTFS KSFKEFKLPE PSTRDDFAVG DDRNGAAGES DSGDATSSWS NMLPELLREI IQRVEASEDS WPLRQNVVAC GCVCKRWRQV
101: TEDVVESSLQ AGKITFPSCL KQPGPRDPPL QCFIKRDKKN ATFYLYLALS PSLMDQGKFL LAARRYRSGA HIEYIISLDA DDLSQRSKAY VGKLRSDFLG
201: TNFTIYDSQP PHNGARPSSS RSCRRFASKQ ISPQLPAGNF EVGNVSYKLN LLKSRGPRRM ICSLKCPCPG EAVIDKSQDA PKKKQPGSAE ANSTVLKNKA
301: PRWHEHLQCW CLNFHGRVTV ASVKNFQLVA TMDQSQPDGK GDEDTVILQF GKVGDDVFTM DYRKPLSAFQ AFAICLTSFG TKLACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.