Factsheet for Bra030942.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53320.1	Bra003735.1-P	AT1G75950.1	25168737
AT1G53320.1	Bra008231.1-P	AT1G75950.1	25168737
AT1G53320.1	Bra015801.1-P	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25719	Canola	cytosol	82.65	98.18
AT1G53320.1	Thale cress	mitochondrion	85.97	88.92
Bra041095.1-P	Field mustard	cytosol, mitochondrion	85.2	88.59
GSMUA_Achr7P25250_001	Banana	cytosol	60.2	74.21
KRH27356	Soybean	mitochondrion	70.66	73.28
KRH21960	Soybean	mitochondrion	71.17	73.23
GSMUA_Achr3P31460_001	Banana	cytosol	58.93	72.19
GSMUA_Achr4P01150_001	Banana	cytosol	58.67	72.1
VIT_19s0014g01250.t01	Wine grape	mitochondrion	70.92	69.33
PGSC0003DMT400018209	Potato	mitochondrion	65.82	66.84
Solyc07g062390.2.1	Tomato	mitochondrion	65.56	66.58
TraesCS3B01G304600.1	Wheat	cytosol	59.18	66.1
TraesCS3D01G270500.1	Wheat	cytosol	59.18	65.35
TraesCS3A01G270800.1	Wheat	cytosol	58.93	65.07
HORVU3Hr1G061930.1	Barley	cytosol	58.67	64.61
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	48.21	64.07
Os01t0674500-01	Rice	cytosol	57.91	63.76
Zm00001d011578_P003	Maize	nucleus	58.16	63.69
Os05t0560400-00	Rice	cytosol	56.63	63.07
EES03425	Sorghum	plastid	57.65	62.78
GSMUA_Achr4P10540_001	Banana	mitochondrion	60.71	61.98
Os05t0514300-01	Rice	mitochondrion	58.67	61.83
Zm00001d038691_P001	Maize	mitochondrion	57.14	61.04
GSMUA_Achr10P...	Banana	mitochondrion	57.4	60.81
EES18499	Sorghum	mitochondrion	57.65	60.75
TraesCS1A01G333900.1	Wheat	mitochondrion	56.12	58.98
TraesCS1D01G336400.1	Wheat	mitochondrion	56.38	58.78
TraesCS1B01G347200.1	Wheat	mitochondrion	55.87	58.71
Zm00001d043895_P003	Maize	cytosol	55.36	57.41
OQU78419	Sorghum	cytosol	52.55	54.64
HORVU1Hr1G076900.1	Barley	cytosol	53.57	54.55
Os01t0759100-01	Rice	cytosol, plastid	48.72	51.9
Bra020754.1-P	Field mustard	cytosol	43.11	49.13
Bra039620.1-P	Field mustard	cytosol	45.15	46.83
Bra021446.1-P	Field mustard	cytosol	47.19	46.02
Bra002179.1-P	Field mustard	mitochondrion	44.13	43.36
Bra024763.1-P	Field mustard	cytosol	47.45	42.47
Bra040862.1-P	Field mustard	mitochondrion, nucleus	42.86	42.42
Bra010985.1-P	Field mustard	cytosol	47.19	42.14
Bra015624.1-P	Field mustard	cytosol, mitochondrion	42.86	41.69
Bra040803.1-P	Field mustard	cytosol	47.45	41.61
Bra012486.1-P	Field mustard	cytosol	46.94	41.53
Bra015711.1-P	Field mustard	cytosol, mitochondrion	47.19	39.78
HORVU0Hr1G001350.2	Barley	cytosol	31.38	32.98
Bra026081.1-P	Field mustard	nucleus	18.62	18.77

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra030942	EnsemblPlants:Bra030942.1	EnsemblPlants:Bra030942.1-P	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M4EQ71
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI00025457FE
SEG:seg	:	:	:	:	:

Description

AT1G53320 (E=1e-177) AtTLP7 | AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA08:+:973404..975914

Molecular Weight (calculated)

43484.9 Da

IEP (calculated)

10.078

GRAVY (calculated)

-0.520

Length

392 amino acids

Sequence
(BLAST)

001: MPLSRSLLSR RFSISFRESQ GGKTHPEADS HQPPPPTTKM MMLPPPPSNG AAGSSWSAML PELLGEIIRR VEDSEDQWPH RRDVVSCACV SKKWREIAQE
101: MVRSPLNSGK ITFPSCLKLP GPREFSNQCL IKRNKKTSTF YLYLALTPSF TDKGKFLLAA RRFRTGAYTE YIISLDADDF SQGSNAYVGK LRSDFLGTNF
201: TVYDSQPPHN GAKPSNGKAS RRFASKQISP QVPAGNFEVG HVSYKFNLLK SRGPRRMIST LRCPSSSPPP PSSSSTDHQN PCDVVTKIMK KPNKDGSGLT
301: ILKNKAPRWH EHLQCWCLNF HGRVTVASVK NFQLAATVDQ SQPGGKGDEE TVLLQFGKVG DDTFTMDYRQ PLSAFQAFAI CLTSFGTKLA CE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.