Factsheet for Bra020754.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra025618.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06380.1	Bra003735.1-P	AT1G75950.1	15064372
AT3G06380.1	Bra008231.1-P	AT1G75950.1	15064372
AT3G06380.1	Bra015801.1-P	AT1G75950.1	15064372
AT3G06380.1	Bra003735.1-P	AT1G75950.1	25168737
AT3G06380.1	Bra008231.1-P	AT1G75950.1	25168737
AT3G06380.1	Bra015801.1-P	AT1G75950.1	25168737
AT3G06380.1	Bra025618.1-P	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24698	Canola	mitochondrion	99.13	96.6
CDY05258	Canola	mitochondrion	97.97	93.61
AT3G06380.1	Thale cress	mitochondrion	81.98	74.21
Bra002179.1-P	Field mustard	mitochondrion	77.03	66.42
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	10.76	62.71
Bra021446.1-P	Field mustard	cytosol	61.92	52.99
Bra039620.1-P	Field mustard	cytosol	52.62	47.88
Bra041095.1-P	Field mustard	cytosol, mitochondrion	49.42	45.09
Bra015624.1-P	Field mustard	cytosol, mitochondrion	52.62	44.91
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.16	44.44
Bra030942.1-P	Field mustard	mitochondrion	49.13	43.11
Bra024763.1-P	Field mustard	cytosol	54.65	42.92
Bra012486.1-P	Field mustard	cytosol	54.36	42.21
Bra010985.1-P	Field mustard	cytosol	53.78	42.14
Bra040803.1-P	Field mustard	cytosol	54.07	41.61
Bra015711.1-P	Field mustard	cytosol, mitochondrion	53.49	39.57
Bra026081.1-P	Field mustard	nucleus	20.35	17.99

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra020754	EnsemblPlants:Bra020754.1	EnsemblPlants:Bra020754.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009620	InterPro:IPR001810	InterPro:IPR025659	UniProt:M4DW60
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF73
SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002545F65

Description

AT3G06380 (E=1e-111) ATTLP9, TLP9 | ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor

Coordinates

chrA02:+:23274988..23276934

Molecular Weight (calculated)

38737.9 Da

IEP (calculated)

10.339

GRAVY (calculated)

-0.305

Length

344 amino acids

Sequence
(BLAST)

001: MRSRPHRVVH EAASPTPGSE PFRWSELPDE LLREILIRVE SADDGDWPSR RSVVACAGVC RVWRMIVKEI VAVPELSSKL TFPISLKQPG PRGSLVQCFI
101: KRNRNTQSYH LYLGLTNSLT DNGKFLLAAC KLKRATCTDY IISLRSDDMS RRSNAYLGRV RSNFIGTKFT VFEGNLMPQT RSSKMVKSRS SNPMKVSPRA
201: PSGSYPVAHI SYELNVLGSR GPRRMRCVMD TLPTSLMHPQ RAAASSNSLR DPPLVLSNKT PRWHEQLRCW CLNFHGRVTV ASVKNFQLVA VGDRETEQAT
301: SERIILQFGK VGKDMFTMDY GYPISAFQAF AICLSSFETR IACE

Best Arabidopsis Sequence Match ( AT3G06380.1 )
(BLAST)

001: MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP
101: RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI
201: KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW
301: HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD MFTMDYGYPI SAFQAFAICL SSFETRIACE

Arabidopsis Description

TULP9Tubby-like F-box protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.