Factsheet for Bra024763.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25280.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G25280.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G25280.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G25280.1	Bra003735.1-P	AT1G75950.1	25168737
AT1G25280.1	Bra008231.1-P	AT1G75950.1	25168737
AT1G25280.1	Bra015801.1-P	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42119	Canola	cytosol	97.26	97.48
Bra010985.1-P	Field mustard	cytosol	92.92	92.71
Bra012486.1-P	Field mustard	cytosol	90.41	89.39
AT1G25280.1	Thale cress	cytosol	89.04	87.64
KRH10476	Soybean	cytosol, mitochondrion	73.52	75.41
VIT_12s0055g00460.t01	Wine grape	mitochondrion	72.83	75.24
KRH43964	Soybean	cytosol, mitochondrion	72.83	74.71
PGSC0003DMT400002858	Potato	mitochondrion	71.0	73.0
Solyc10g046970.1.1	Tomato	mitochondrion	71.0	73.0
PGSC0003DMT400076537	Potato	cytosol	70.78	72.6
Solyc01g104670.2.1	Tomato	cytosol	70.32	72.13
HORVU5Hr1G023650.1	Barley	plastid	39.5	71.78
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	67.35	68.93
Bra040803.1-P	Field mustard	cytosol	68.95	67.56
Os12t0163400-01	Rice	cytosol	66.89	65.84
TraesCS5A01G124100.1	Wheat	cytosol	65.07	64.92
KXG23034	Sorghum	cytosol, mitochondrion	64.61	64.76
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	64.61	64.46
TraesCS5B01G123800.1	Wheat	golgi	64.38	64.24
Bra015711.1-P	Field mustard	cytosol, mitochondrion	68.04	64.09
TraesCS4D01G110100.1	Wheat	golgi	63.93	63.64
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	63.7	63.41
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	63.47	63.18
Zm00001d053179_P001	Maize	cytosol	63.7	62.28
EES08030	Sorghum	cytosol, mitochondrion	63.24	60.75
Bra039620.1-P	Field mustard	cytosol	51.37	59.52
Bra021446.1-P	Field mustard	cytosol	52.28	56.97
GSMUA_Achr11P...	Banana	cytosol	53.42	56.39
Bra015624.1-P	Field mustard	cytosol, mitochondrion	50.91	55.34
Bra040862.1-P	Field mustard	mitochondrion, nucleus	50.0	55.3
Bra020754.1-P	Field mustard	cytosol	42.92	54.65
Bra002179.1-P	Field mustard	mitochondrion	44.98	49.37
Bra041095.1-P	Field mustard	cytosol, mitochondrion	42.47	49.34
Bra030942.1-P	Field mustard	mitochondrion	42.47	47.45
Bra026081.1-P	Field mustard	nucleus	18.95	21.34

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	EnsemblPlantsGene:Bra024763	EnsemblPlants:Bra024763.1	EnsemblPlants:Bra024763.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659
UniProt:M4E7K8	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000254271B	SEG:seg	:	:	:

Description

AT1G25280 (E=3e-204) AtTLP10 | AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA09:+:22927187..22929153

Molecular Weight (calculated)

49174.9 Da

IEP (calculated)

9.607

GRAVY (calculated)

-0.365

Length

438 amino acids

Sequence
(BLAST)

001: MSFRSIVQDL RDGLGSLSKR SFDFRLHHKG KSQGSCEYSS SRDLLSPLIV QTSRWANLPP ELLLDVIKRL EESESNWPAR KHVVACASVC RSWRAMCQEI
101: VLCPEISGKL TFPVSLKQPG PRDTMIQCFI KRDKSKLTFH LYLCLSPALV VENGKFLLSA KRTRRTTKTE YIISMDADNI SRSSNSYLGK LRSNFLGTKF
201: VVYDTQPPQN TPSSSSALIT DQTSRSMFHS KRVSPKLPSG SYNIAQITYE LNVLGTRGPR RMHCVMNSIP TSSLEPGGSV PNQPDKLLPG PLDESFRSNI
301: SFSKSSLDYR SVDFSSSRFS ELGVVAPCEE EQEETSFRPL VLKNKQPRWH EQLQCWCLNF RGRVTVASVK NFQLVAARQP PTQGAAAAAP SHPEQEKVIL
401: QFGKVGKDMF TMDYRYPLSA FQAFAICLSS FDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.