Factsheet for Os12t0163400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G040000.2	Barley	cytosol	87.19	88.38
TraesCS5A01G124100.1	Wheat	cytosol	86.52	87.7
TraesCS5B01G123800.1	Wheat	golgi	86.07	87.24
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	85.84	87.02
KXG23034	Sorghum	cytosol, mitochondrion	84.04	85.58
VIT_18s0072g00630.t01	Wine grape	cytosol	74.38	77.88
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	74.83	77.8
KRH10476	Soybean	cytosol, mitochondrion	72.36	75.41
VIT_12s0055g00460.t01	Wine grape	mitochondrion	71.46	75.0
KRH08694	Soybean	mitochondrion	71.24	74.76
KRH43964	Soybean	cytosol, mitochondrion	71.69	74.71
Solyc04g071440.2.1	Tomato	mitochondrion	71.24	74.41
PGSC0003DMT400061933	Potato	cytosol	71.24	74.41
KRH70303	Soybean	cytosol	70.34	73.82
KRG91652	Soybean	cytosol, mitochondrion	71.24	73.72
KRH35144	Soybean	cytosol, mitochondrion	71.24	73.72
Solyc10g046970.1.1	Tomato	mitochondrion	70.56	73.71
Os05t0437900-01	Rice	mitochondrion	73.26	73.26
PGSC0003DMT400002858	Potato	mitochondrion	70.11	73.24
PGSC0003DMT400076537	Potato	cytosol	70.11	73.07
Solyc01g104670.2.1	Tomato	cytosol	69.89	72.83
Os01t0866800-01	Rice	mitochondrion	69.89	69.42
CDX84977	Canola	cytosol	63.82	67.62
CDY45959	Canola	cytosol	65.17	67.6
CDY13570	Canola	cytosol	64.49	67.53
Bra024763.1-P	Field mustard	cytosol	65.84	66.89
Bra040803.1-P	Field mustard	cytosol	66.97	66.67
CDY42119	Canola	cytosol	65.17	66.36
Os11t0163600-01	Rice	cytosol, mitochondrion	24.94	66.07
CDY36119	Canola	cytosol	62.47	65.88
Os04t0687900-01	Rice	cytosol	68.31	65.8
AT1G25280.1	Thale cress	cytosol	65.62	65.62
CDY66464	Canola	cytosol	63.15	65.5
Bra012486.1-P	Field mustard	cytosol	65.17	65.46
CDY72036	Canola	cytosol	65.17	65.46
CDY51990	Canola	cytosol	62.02	65.25
Bra010985.1-P	Field mustard	cytosol	64.27	65.15
AT1G76900.1	Thale cress	cytosol	66.29	64.84
Os08t0103300-01	Rice	mitochondrion	65.62	64.75
AT1G43640.1	Thale cress	cytosol	61.57	63.87
CDY65845	Canola	cytosol, mitochondrion	64.49	63.78
CDX87562	Canola	cytosol, mitochondrion	64.04	63.19
Bra015711.1-P	Field mustard	cytosol, mitochondrion	65.17	62.37
GSMUA_Achr11P...	Banana	cytosol	56.18	60.24
Os03t0351400-01	Rice	cytosol	38.65	58.11
Os02t0705300-01	Rice	cytosol	52.81	54.91
Os07t0667000-01	Rice	cytosol	49.89	54.68
Os01t0674500-01	Rice	cytosol	40.9	51.12
Os05t0560400-00	Rice	cytosol	39.33	49.72
Os05t0514300-01	Rice	mitochondrion	41.12	49.19
Os01t0759100-01	Rice	cytosol, plastid	36.18	43.75
Os03t0348500-00	Rice	extracellular	10.34	27.22
Os02t0179400-00	Rice	nucleus	12.13	13.08

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:4351582	ProteinID:ABA95864.1	ProteinID:ABG21895.1
EMBL:AK102298	ProteinID:BAF29249.1	ProteinID:BAT16010.1	UniProt:C6F1L9	ProteinID:EAZ19745.1	EMBL:EU847004
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008289
GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlantsGene:Os12g0163400	EnsemblPlants:Os12t0163400-01	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43
UniProt:Q2QXB2	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI00006819BC	RefSeq:XP_015619922.1	SEG:seg	:	:	:

Description

tubby-like protein 4, tubby-like protein 14, F-box protein 645Tubby family protein. (Os12t0163400-01)

Coordinates

chr12:-:3212528..3217692

Molecular Weight (calculated)

49089.7 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.305

Length

445 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR GFEVRLVGHR RGRSHSAVHE LRDGHAAAAA ADVVQSSCWA NLPPELLRDV IERLEASEAA WPSRKNVVAC AAVCRTWRDM
101: CREIVKNPEF CGKITFPVSL KQPGPRNGAI QCFIKRDKST QTYNLYLCLS SAVLVESGKF LLSAKRYSRA TCTEYTIFMS ADNTSRSSNM YIGKLRSNLL
201: GTKFVIYDTQ PPCNTANVSQ SGKTSRRFYS RKVSPKNPSS TYSIAQVSYE LNVLGTRGPR RMNCVMHSIP ASSLEAGGTV PCQPDSVLAR SLDESFGSIS
301: FSKSSIMDRS IRFSSSRYSD ISVGGPMVGG QALGDSDESK ERPLILRNKA PRWHEQLQCW CLNFKGRVTV ASVKNFQLVA ATQPAAGAPT PSQPAPPPPP
401: DHDKVILQFG KVAKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.