Factsheet for Os04t0687900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82627	Sorghum	cytosol	77.49	79.03
Zm00001d002896_P001	Maize	cytosol	74.89	78.64
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	79.22	78.04
TraesCS2A01G574000.1	Wheat	golgi	79.44	77.92
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	79.22	77.54
Os08t0103300-01	Rice	mitochondrion	75.11	76.94
Os05t0437900-01	Rice	mitochondrion	69.91	72.58
Os12t0163400-01	Rice	cytosol	65.8	68.31
Os01t0866800-01	Rice	mitochondrion	66.02	68.08
HORVU2Hr1G124880.1	Barley	plastid	79.87	59.42
Os03t0351400-01	Rice	cytosol	37.88	59.12
Os11t0163600-01	Rice	cytosol, mitochondrion	20.13	55.36
Os07t0667000-01	Rice	cytosol	47.4	53.94
Os01t0674500-01	Rice	cytosol	40.48	52.53
Os02t0705300-01	Rice	cytosol	47.84	51.64
Os05t0514300-01	Rice	mitochondrion	41.13	51.08
Os05t0560400-00	Rice	cytosol	38.74	50.85
Os01t0759100-01	Rice	cytosol, plastid	35.5	44.57
Os03t0348500-00	Rice	extracellular	10.39	28.4
Os02t0179400-00	Rice	nucleus	11.26	12.59

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	EntrezGene:4337480	EMBL:AK098928	EMBL:AK104333	ProteinID:BAF16249.1
ProteinID:BAS91751.1	ProteinID:CAE01783.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlantsGene:Os04g0687900
EnsemblPlants:Os04t0687900-01	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF38	UniProt:Q7XSV4	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI00001B0DE1	RefSeq:XP_015636871.1	SEG:seg	:

Description

tubby-like protein 3, tubby-like protein 7, F-box protein 240Similar to T24D18.17 protein (Tubby-like protein TULP8). (Os04t0687900-01);Similar to CAA303719.1 protein. (Os04t0687900-02);Similar to T24D18.17 protein (Tubby-like protein TULP8). (Os04t0687900-03)

Coordinates

chr4:+:35176157..35179771

Molecular Weight (calculated)

51532.1 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.495

Length

462 amino acids

Sequence
(BLAST)

001: MSFRSIVRDF RDSFGTLSKR SFEVKISGFS GRHRGKSIGP SSELDDTPVV AQQSKWAGLP PELLRDVMKR LEEDDSNWPS RKDVVACASV CTTWRDMCKD
101: IVRNPEFCGK LTFPVSLKQP GPRDGVIQCF IKRDKSKLTY HLYLCLSSAV LDETGKFLLS AKRSRRTTHT DYIISMDSKN ISRSSSGYIG KLRSNFLGTK
201: FIIYDTQPPY NARTLCSQER TSRRFSSRKV SPKVPTGCYP IVQVNYELNV LGTRGPRRMQ CAMHSIPASA VEPGGIVPGQ PKELLPRLFE ESFRSMATSF
301: SKYSITDHST DFSSSRFSEF GGGALQGQEQ EQDGDDVNKE RPLVLRNKAP RWHEQLQCWC LNFRGRVTVA SVKNFQLIAA APQPSSGAAS EPSQAGQAAQ
401: QQTQPSQPSS SSSSSSSNHD TVILQFGKVA KDMFTMDYRY PLSAFQAFAI CLTSFDTKLA CE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.