CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002896_P001	Maize	cytosol	88.52	91.14
Os04t0687900-01	Rice	cytosol	79.03	77.49
TraesCS2A01G574000.1	Wheat	golgi	76.16	73.25
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	75.72	73.13
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	75.72	72.67
KXG24166	Sorghum	cytosol	68.65	69.42
EES19596	Sorghum	mitochondrion	66.89	67.33
KXG23034	Sorghum	cytosol, mitochondrion	62.91	65.22
EES01812	Sorghum	mitochondrion	64.68	61.04
EES08030	Sorghum	cytosol, mitochondrion	58.94	58.55
KXG39376	Sorghum	cytosol, plastid	50.77	57.64
HORVU2Hr1G124880.1	Barley	plastid	76.38	55.72
EES07397	Sorghum	cytosol	49.01	51.27
EES03425	Sorghum	plastid	40.62	51.11
EES18499	Sorghum	mitochondrion	40.62	49.46
EER97690	Sorghum	cytosol	43.27	49.12
OQU78419	Sorghum	cytosol	36.42	43.77
KXG29622	Sorghum	plastid	19.21	20.52

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	UniProt:A0A1Z5RFZ9	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlants:OQU82627	ProteinID:OQU82627
ProteinID:OQU82627.1	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF38	EnsemblPlantsGene:SORBI_3006G277200	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000B425855	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:60822255..60826353

Molecular Weight (calculated)

50531.4 Da

IEP (calculated)

9.786

GRAVY (calculated)

-0.415

Length

453 amino acids

Sequence
(BLAST)

001: MSFRSMVRDI RESFGNISRR NFEVRIHHRG KSLGSSSDLQ DKPAEIQQSR WASLPPELLR DVMKRLEEDD SSWPDRKDVV CCASVCTTWR DMCKDIVRSP
101: EHCAKLTFPI SLKQPGPRDG VIQCFIKRDK SKLTYRLYLS LSSAVLDENG KFLLAAKRSR RMAHTEYAIF MGSRNFSRSS TGYIGKLRSN FLGTKFIIYD
201: TQPPYNAGKL CAQERAPSRR LSSRKVSPRV PTGSYPIAQV NYELNVLGTR GPRRMQCAMH SIPASAVEPG GVVPGQSKEL LPRLFDESFS STATSFSKYS
301: VVDSSMDLSS CRFSELSGGA LQEGSDDSEK ERPLVLRNKA PRWHEQLQCW CLNFRGRVTV ASVKNFQLIS SVPQPAPVGV SSAPPLAVTP PTQTQPQASG
401: PSSASSSHVH DPVILQFGKV GRDMFTMDYR YPLSAFQAFA ICLTSFDTKL ACE

Best Arabidopsis Sequence Match ( AT1G43640.1 )
(BLAST)

001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE

Arabidopsis Description

TULP5Tubby-like F-box protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q944S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.