CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052765_P002	Maize	mitochondrion	91.52	89.91
Os08t0103300-01	Rice	mitochondrion	85.49	84.92
TraesCS7A01G326400.1	Wheat	golgi	81.7	80.26
TraesCS7D01G323100.1	Wheat	mitochondrion	81.7	79.91
TraesCS7B01G227000.1	Wheat	mitochondrion	81.7	79.91
OQU82627	Sorghum	cytosol	69.42	68.65
EES19596	Sorghum	mitochondrion	68.75	68.44
KXG23034	Sorghum	cytosol, mitochondrion	62.95	64.53
EES01812	Sorghum	mitochondrion	65.62	61.25
EES08030	Sorghum	cytosol, mitochondrion	59.82	58.77
KXG39376	Sorghum	cytosol, plastid	48.88	54.89
EES03425	Sorghum	plastid	40.62	50.56
EES07397	Sorghum	cytosol	48.66	50.35
EER97690	Sorghum	cytosol	42.41	47.62
EES18499	Sorghum	mitochondrion	39.29	47.31
OQU78419	Sorghum	cytosol	35.94	42.71
KXG29622	Sorghum	plastid	19.2	20.28

Protein Annotations

MapMan:15.5.21	UniProt:A0A1B6PER5	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlants:KXG24166	ProteinID:KXG24166	ProteinID:KXG24166.1
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF42
EnsemblPlantsGene:SORBI_3007G002500	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0001C80C66	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:241106..246294

Molecular Weight (calculated)

49917.5 Da

IEP (calculated)

10.030

GRAVY (calculated)

-0.408

Length

448 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV SESFGSLSRR SFEVRISGLP GLSGHHRGKS VGSLSDRPVV VDQSRWVGLP PELLRDVMKR LEEGESNWPS RKNVVACAAV CGTWREICKD
101: IVLSPEFCGK LTFPVSLKQP GPRSGMIQCF IKRDKSTSTY YLYLCLSPAV LSEDGKFLLA AKRNRRTTYT EYIISVDRKN ISRSSNGYVG KMRSNFLGTK
201: FVVYDTQTPH NAGSLLSCER GSRRISSRRV SPKVPTASYP IARVNYELNL LGTRGPRRMN CTMHSIPASA LDPEGMVPGQ PKQLFIPGSS SFGESFRSAN
301: TSSSSRFSVT DRSLDFSSSR FSEISGLAQQ DEGSGQAKER PLALRNKEPR WHEQLQCWCL NFRGRVTVAS VKNFQLIAAP QLDSESSQQA QQQAQPSNSS
401: SVLDHDKVIL QFGKVAKDMF TMDYRYPLSA FQAFTICLTS FDSKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.