CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0437900-01	Rice	mitochondrion	90.89	91.91
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	87.78	87.39
TraesCS1B01G282900.1	Wheat	mitochondrion	87.56	86.78
TraesCS1A01G273100.1	Wheat	mitochondrion	87.56	86.4
TraesCS1D01G273200.1	Wheat	mitochondrion	86.89	86.12
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	54.89	80.19
Zm00001d038310_P003	Maize	mitochondrion	85.33	77.11
EES01812	Sorghum	mitochondrion	80.22	75.21
KXG23034	Sorghum	cytosol, mitochondrion	71.56	73.68
KXG24166	Sorghum	cytosol	68.44	68.75
OQU82627	Sorghum	cytosol	67.33	66.89
EES08030	Sorghum	cytosol, mitochondrion	67.56	66.67
KXG39376	Sorghum	cytosol, plastid	53.11	59.9
EES07397	Sorghum	cytosol	52.22	54.27
EES03425	Sorghum	plastid	42.44	53.06
EES18499	Sorghum	mitochondrion	41.33	50.0
EER97690	Sorghum	cytosol	44.22	49.87
OQU78419	Sorghum	cytosol	37.78	45.09
KXG29622	Sorghum	plastid	18.44	19.58

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:8071183	UniProt:C5YYQ1	EnsemblPlants:EES19596
ProteinID:EES19596	ProteinID:EES19596.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39
EnsemblPlantsGene:SORBI_3009G152200	SUPFAM:SSF54518	SUPFAM:SSF81383	unigene:Sbi.2307	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0001A89495	RefSeq:XP_002441166.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:50862631..50865965

Molecular Weight (calculated)

50163.2 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.326

Length

450 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSFGSLSRR SFEVTIAGLS GLTVHHRGKS QSTVHEVCDT DLIIQESRWA NLPPELLRDV IRRLEASEST WPNRKHVVSC AAVCRAWREM
101: CREIVLSPEF CGKLTFPVSL KQPGPRDGMI QCFIKRDKSK STYHLYLCLS TAVLMENGKF LLSAKRNRKT TCTEYVISMD AENISRSSST YIGKLRSNFL
201: GTKFMISDTQ PPYNGAVVPH AGRTSRRFNS KKVSPKVPTG SYNIAQVTYE LNVLGTRGPR RMHCVMHSIP ASAVEPGGIV PGQPEQILPR ALEESFRSTT
301: SFSKSSIMDR SMDFSSSRDF SSARFSDIAG GAAIAGDEEG QNKERPLVLR NKAPRWHEQL QCWCLNFRGR VTIASVKNFQ LIAAPSPAPA PAARAPTPSS
401: QPVPQDQDKI ILQFGKVAKD MFTMDYRYPL SAFQAFAICL SSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.