CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051568_P001	Maize	cytosol	94.69	94.04
Zm00001d017773_P001	Maize	cytosol	94.46	93.59
Os02t0705300-01	Rice	cytosol	87.07	88.08
TraesCS6B01G300200.1	Wheat	cytosol	85.91	87.32
TraesCS6D01G252800.1	Wheat	cytosol	85.45	87.06
HORVU6Hr1G068970.3	Barley	cytosol	85.45	86.65
TraesCS6A01G272800.1	Wheat	cytosol	84.99	85.78
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	32.33	78.65
GSMUA_Achr2P23080_001	Banana	cytosol	24.48	77.94
GSMUA_Achr6P09030_001	Banana	cytosol	61.43	73.48
VIT_04s0023g01950.t01	Wine grape	cytosol	67.21	70.46
KRH76777	Soybean	cytosol	67.44	70.36
KRH28692	Soybean	cytosol	66.97	70.05
GSMUA_Achr2P22940_001	Banana	cytosol	57.51	67.85
Solyc04g071750.2.1	Tomato	cytosol	62.59	67.75
PGSC0003DMT400016310	Potato	cytosol	62.36	67.33
Solyc03g033980.2.1	Tomato	cytosol	62.59	66.75
PGSC0003DMT400009280	Potato	cytosol	62.59	66.58
PGSC0003DMT400058090	Potato	cytosol	62.36	66.5
Solyc02g085130.2.1	Tomato	cytosol	62.82	66.18
KRH08239	Soybean	cytosol	63.05	65.94
KRH69894	Soybean	cytosol	63.05	65.94
VIT_18s0001g12660.t01	Wine grape	cytosol	63.05	65.62
PGSC0003DMT400040088	Potato	cytosol	62.12	65.61
Solyc02g062670.2.1	Tomato	cytosol	62.12	65.45
KRH15179	Soybean	cytosol	61.43	62.88
Bra039620.1-P	Field mustard	cytosol	54.73	62.7
CDY46301	Canola	cytosol	54.73	62.7
CDY25159	Canola	cytosol	54.27	62.67
AT2G18280.2	Thale cress	cytosol	56.12	61.68
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	41.11	59.93
CDY10578	Canola	mitochondrion	5.77	59.52
KRH05837	Soybean	mitochondrion	61.89	59.03
CDY65687	Canola	cytosol, mitochondrion	50.12	58.02
AT1G47270.1	Thale cress	nucleus	54.73	57.38
Bra040862.1-P	Field mustard	mitochondrion, nucleus	52.42	57.32
CDY17028	Canola	mitochondrion, nucleus	51.96	56.96
Bra015624.1-P	Field mustard	cytosol, mitochondrion	52.66	56.58
KXG39376	Sorghum	cytosol, plastid	51.96	56.39
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	23.79	52.28
EES19596	Sorghum	mitochondrion	54.27	52.22
KXG23034	Sorghum	cytosol, mitochondrion	52.42	51.95
EES03425	Sorghum	plastid	41.8	50.28
EER97690	Sorghum	cytosol	45.73	49.62
EES08030	Sorghum	cytosol, mitochondrion	51.96	49.34
OQU82627	Sorghum	cytosol	51.27	49.01
KXG24166	Sorghum	cytosol	50.35	48.66
EES18499	Sorghum	mitochondrion	41.8	48.66
EES01812	Sorghum	mitochondrion	51.27	46.25
GSMUA_Achr10P...	Banana	nucleus	22.4	46.19
OQU78419	Sorghum	cytosol	36.03	41.38
Zm00001d033948_P004	Maize	cytosol	16.17	38.67
CDY06747	Canola	cytosol, mitochondrion	50.81	38.06
KXG29622	Sorghum	plastid	20.55	20.99

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:8073859	UniProt:C5Y0B7	EnsemblPlants:EES07397
ProteinID:EES07397	ProteinID:EES07397.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75
EnsemblPlantsGene:SORBI_3004G267600	SUPFAM:SSF54518	SUPFAM:SSF81383	unigene:Sbi.10417	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0001A85C35	RefSeq:XP_002454421.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:61181480..61185155

Molecular Weight (calculated)

48065.6 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.426

Length

433 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGSGSDG RAGHGRSGSR HSWPSLWAEQ QQPQRQGQEG PQHQHQHQGR WANLPPELLL DVIQRVESSE ATWPARRQVV
101: ACAAVCRSWR EVTKEVVKTL EECGRITFPI SLKQPGPRDL PVQCFVRRER ATSTYLLYLG LSPSMNMEND KLLLAARKVR RATRTSFVIS LVSDDFSHSS
201: STYVGKLKPN FLGTKFTIFD SQPPPDAVVL PNNKPSKRQS KQVSPRLPLG NYNVATVTYE LTVLRNRGPR RMQCTMHSIP AECIQEGGKA PTPTGTIQSL
301: DEPVSTSPST KGKEVALEFS STSLSADLSG LALACANETP LVLKNKAPRW HEQLQCWCLN FRGRVTVASV KNFQLVASVD PSLNIPAAEQ EKVILQFGKI
401: GKDIFTMDYR YPLSAFQAFA ICLTSFDTKP ACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.