CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029165_P004	Maize	cytosol, plastid	95.24	94.76
Os03t0351400-01	Rice	cytosol	67.42	90.88
TraesCS4B01G166400.1	Wheat	cytosol, plastid	86.72	85.64
TraesCS4A01G140800.1	Wheat	cytosol, plastid	85.96	85.32
TraesCS4D01G164200.1	Wheat	cytosol, plastid	86.22	85.15
VIT_01s0010g01060.t01	Wine grape	mitochondrion	10.28	75.93
GSMUA_Achr1P11290_001	Banana	cytosol	74.44	73.15
VIT_07s0104g01290.t01	Wine grape	cytosol	73.68	72.59
GSMUA_Achr3P17440_001	Banana	cytosol	72.68	71.96
PGSC0003DMT400029513	Potato	cytosol	70.93	71.46
Solyc09g074510.2.1	Tomato	cytosol	70.18	70.71
AT2G47900.3	Thale cress	cytosol	70.43	69.04
Bra021446.1-P	Field mustard	cytosol	69.17	68.66
CDY55525	Canola	cytosol	68.92	68.41
EER97690	Sorghum	cytosol	68.17	68.17
CDY27467	Canola	cytosol	67.67	68.01
KRH71532	Soybean	cytosol	68.17	68.0
KXG23034	Sorghum	cytosol, mitochondrion	58.9	53.78
EES19596	Sorghum	mitochondrion	59.9	53.11
EES07397	Sorghum	cytosol	56.39	51.96
EES03425	Sorghum	plastid	46.87	51.94
EES18499	Sorghum	mitochondrion	48.37	51.88
OQU82627	Sorghum	cytosol	57.64	50.77
EES08030	Sorghum	cytosol, mitochondrion	57.39	50.22
KXG24166	Sorghum	cytosol	54.89	48.88
EES01812	Sorghum	mitochondrion	57.64	47.92
VIT_01s0010g01050.t01	Wine grape	cytosol	15.79	46.67
OQU78419	Sorghum	cytosol	42.36	44.83
VIT_00s0426g00050.t01	Wine grape	extracellular	17.79	44.65
KXG29622	Sorghum	plastid	20.05	18.87

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A1B6QN76	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlants:KXG39376
ProteinID:KXG39376	ProteinID:KXG39376.1	ProteinID:KXG39377.1	ProteinID:KXG39378.1	ProteinID:KXG39379.1	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36
EnsemblPlantsGene:SORBI_3001G372000	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0001C80A44	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:66019188..66024669

Molecular Weight (calculated)

44384.0 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.364

Length

399 amino acids

Sequence
(BLAST)

001: MSFRSLIQDM RDEFGSISRH SLRSRSHRSA GNASRAAAAG PSEAMDQSCW AQLPPELLRE VLVRIEASES WWPARRDVVS CAGVCRTWRG IMKEAVRVPE
101: VSGKLTFPIS LKQPGPRDGT LKCFIRRNRT TQTYYLYIGL TEALADDGKF LLAARKCRKP TCTDYLISLD KVDMSKGSST YIGKLRSNFL GTKFTVYDAH
201: PPYDGAVVSK SRSARVVGLN QVSPRVPAGN YPVSHISYEL NVLGSRGPRR MNCVMDSIPA SAVEEGGKAP TQTEFPLSSL DSFPSIPFFR SKSARIDSST
301: SQSSRSDRLV LKNKSPRWHE QLQCWCLNFR GRVTVASVKN FQLVASDDNG PGNQDNNKVI LQFGKIGKDL FTMDYRYPIS AFQAFAICLS SFDTKIACE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.