CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053179_P001	Maize	cytosol	88.6	90.18
TraesCS4D01G110100.1	Wheat	golgi	74.78	77.5
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	74.78	77.5
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	74.34	77.05
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	74.34	77.05
KXG23034	Sorghum	cytosol, mitochondrion	73.68	76.89
VIT_18s0072g00630.t01	Wine grape	cytosol	68.2	73.18
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	67.98	72.43
PGSC0003DMT400061933	Potato	cytosol	66.89	71.6
VIT_12s0055g00460.t01	Wine grape	mitochondrion	66.45	71.46
Solyc04g071440.2.1	Tomato	mitochondrion	66.45	71.13
KRH08694	Soybean	mitochondrion	66.01	70.99
KRH10476	Soybean	cytosol, mitochondrion	66.23	70.73
KRH70303	Soybean	cytosol	64.91	69.81
KRH43964	Soybean	cytosol, mitochondrion	65.13	69.56
Solyc10g046970.1.1	Tomato	mitochondrion	64.47	69.01
PGSC0003DMT400002858	Potato	mitochondrion	64.25	68.78
KRG91652	Soybean	cytosol, mitochondrion	64.69	68.6
KRH35144	Soybean	cytosol, mitochondrion	64.47	68.37
PGSC0003DMT400076537	Potato	cytosol	63.82	68.15
Solyc01g104670.2.1	Tomato	cytosol	63.6	67.92
EES19596	Sorghum	mitochondrion	66.67	67.56
CDY13570	Canola	cytosol	60.75	65.18
CDY45959	Canola	cytosol	60.53	64.34
Bra040803.1-P	Field mustard	cytosol	62.5	63.76
CDX84977	Canola	cytosol	58.55	63.57
Bra024763.1-P	Field mustard	cytosol	60.75	63.24
CDY36119	Canola	cytosol	58.33	63.03
CDY42119	Canola	cytosol	60.31	62.93
AT1G76900.1	Thale cress	cytosol	62.5	62.64
CDY51990	Canola	cytosol	57.68	62.17
Bra010985.1-P	Field mustard	cytosol	59.43	61.73
AT1G25280.1	Thale cress	cytosol	59.87	61.35
CDY65845	Canola	cytosol, mitochondrion	60.53	61.33
CDY66464	Canola	cytosol	57.68	61.31
EES01812	Sorghum	mitochondrion	64.47	61.25
Bra012486.1-P	Field mustard	cytosol	59.43	61.17
CDY72036	Canola	cytosol	59.43	61.17
CDX87562	Canola	cytosol, mitochondrion	60.31	60.98
AT1G43640.1	Thale cress	cytosol	56.58	60.14
KXG24166	Sorghum	cytosol	58.77	59.82
Bra015711.1-P	Field mustard	cytosol, mitochondrion	60.96	59.78
OQU82627	Sorghum	cytosol	58.55	58.94
KXG39376	Sorghum	cytosol, plastid	50.22	57.39
GSMUA_Achr11P...	Banana	cytosol	51.75	56.87
EES07397	Sorghum	cytosol	49.34	51.96
EES03425	Sorghum	plastid	41.01	51.94
EER97690	Sorghum	cytosol	44.08	50.38
EES18499	Sorghum	mitochondrion	38.82	47.58
OQU78419	Sorghum	cytosol	35.96	43.5
KXG29622	Sorghum	plastid	17.32	18.63

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:8070670	UniProt:C5Y569	EnsemblPlants:EES08030
ProteinID:EES08030	ProteinID:EES08030.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43
EnsemblPlantsGene:SORBI_3005G047300	SUPFAM:SSF54518	SUPFAM:SSF81383	unigene:Sbi.4354	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0001A862B6	RefSeq:XP_002449042.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:4485830..4488512

Molecular Weight (calculated)

49978.5 Da

IEP (calculated)

8.864

GRAVY (calculated)

-0.271

Length

456 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR GFEVRFLSPR RGKSHGAVHE LHDPVPVVQS SCWASLPPEL LRDVIERLET SEDTWPSRKH VVACAAVCRT WREMCREIVK
101: SPEVSGKITF PVSLKQPGPR DGTIQCFIKR DKSTQVYSLY LSFSSAVPAE DGKFLLSAKR NCRPTYTEYT ISINSGDISR STSNNTYIGK LRSNFLGTKF
201: VIYDTQPPYN ATSPTVAGKT NQRFYSKKGG STKGSCSRYS IGQVSYELNV LGTRGPRRMN CVMHSIPASC LEAGGSVPCQ PDSIVAHSVG EMFSSIPLSK
301: SSTMDHSMHF SSSRFSDAIT ADAIVSGGQA LSNADDEEST DTPLVLRNKA PRWHEQLQCW CLNFRGRVTV ASVKNFQLVA AVMTQPAVGA PTPSQAAPLP
401: LPAPAPGPPL PDQEKVLLQF GKVGKDIFTM DYCYPLSAFQ AFAICLSSFD TKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.