Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002858 | Potato | mitochondrion | 98.12 | 98.12 |
| Solyc01g104670.2.1 | Tomato | cytosol | 86.85 | 86.65 |
| KRH10476 | Soybean | cytosol, mitochondrion | 84.98 | 84.78 |
| KRH43964 | Soybean | cytosol, mitochondrion | 84.27 | 84.07 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 83.33 | 83.73 |
| HORVU5Hr1G023650.1 | Barley | plastid | 44.84 | 79.25 |
| Solyc04g071440.2.1 | Tomato | mitochondrion | 76.29 | 76.29 |
| GSMUA_Achr9P08860_001 | Banana | cytosol, mitochondrion | 75.82 | 75.47 |
| CDY66464 | Canola | cytosol | 72.77 | 72.26 |
| CDX84977 | Canola | cytosol | 71.13 | 72.14 |
| Bra012486.1-P | Field mustard | cytosol | 74.65 | 71.78 |
| CDY72036 | Canola | cytosol | 74.65 | 71.78 |
| CDY51990 | Canola | cytosol | 71.13 | 71.63 |
| CDY36119 | Canola | cytosol | 70.89 | 71.56 |
| CDY42119 | Canola | cytosol | 73.24 | 71.4 |
| Bra010985.1-P | Field mustard | cytosol | 73.47 | 71.3 |
| AT1G25280.1 | Thale cress | cytosol | 74.41 | 71.24 |
| Bra024763.1-P | Field mustard | cytosol | 73.0 | 71.0 |
| Os12t0163400-01 | Rice | cytosol | 73.71 | 70.56 |
| TraesCS4D01G110100.1 | Wheat | golgi | 72.07 | 69.77 |
| TraesCS4B01G112600.1 | Wheat | cytosol, mitochondrion | 72.07 | 69.77 |
| TraesCS4A01G209000.1 | Wheat | cytosol, mitochondrion | 71.83 | 69.55 |
| KXG23034 | Sorghum | cytosol, mitochondrion | 71.13 | 69.34 |
| TraesCS5D01G132000.1 | Wheat | cytosol, mitochondrion | 70.42 | 68.34 |
| TraesCS5B01G123800.1 | Wheat | golgi | 70.42 | 68.34 |
| TraesCS5A01G124100.1 | Wheat | cytosol | 70.42 | 68.34 |
| Zm00001d053179_P001 | Maize | cytosol | 68.54 | 65.18 |
| EES08030 | Sorghum | cytosol, mitochondrion | 69.01 | 64.47 |
| GSMUA_Achr11P... | Banana | cytosol | 56.81 | 58.31 |
| Solyc02g062670.2.1 | Tomato | cytosol | 56.1 | 58.15 |
| Solyc09g074510.2.1 | Tomato | cytosol | 53.99 | 58.08 |
| Solyc04g071750.2.1 | Tomato | cytosol | 54.23 | 57.75 |
| Solyc02g085130.2.1 | Tomato | cytosol | 55.63 | 57.66 |
| Solyc03g033980.2.1 | Tomato | cytosol | 54.69 | 57.39 |
| Solyc07g062390.2.1 | Tomato | mitochondrion | 44.6 | 49.22 |
| Solyc01g067680.2.1 | Tomato | cytosol | 27.7 | 47.39 |
| Solyc03g117730.2.1 | Tomato | cytosol | 21.83 | 22.91 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:15.5.21 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001810 | InterPro:IPR025659 | UniProt:K4CZW2 |
| PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01200 | ScanProsite:PS01201 | PANTHER:PTHR16517 |
| PANTHER:PTHR16517:SF45 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc10g046970.1 | EnsemblPlants:Solyc10g046970.1.1 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI0002769BC0 | : | : | : |
Description
Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:K4CZW2]
Coordinates
chr10:-:38951311..38953941
Molecular Weight (calculated)
47797.3 Da
IEP (calculated)
10.035
GRAVY (calculated)
-0.358
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRSIVRDV RDSFGSLSRR SFDVRLSGHQ RGKSLGSFHD LSDQPPVNQN SCWANLPPEL LFDVIRRLEE SENSWPARKH VVSCASVCRS WRIMCQEIVR
101: SPEVCGKLTF PVSLKQPGPR DGMIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR TRRTTCTEYV ISMDAENISR SSNTYIGKLR SNFLGTKFVI
201: YDTQPPYTFA NVPPPGRTSR RFYSKKVSPK VPTGSYSIAQ IKYELNVLGT RGPRKMHCVM HSIPASAVDV GGSVPGQPEL LPRSLEDSFR SISFSKSLDH
301: SAEFSSSRFS DIVRASSSAE DDSKVKPLVL KNKSPRWHEQ LQCWCLNFRG RVTVASVKNF QLIAAHQPPA GGPTTSRSSQ SDHDKVILQF GKIGKDMFTM
401: DYRYPLSAVQ AFAICLSSFD TKLACE
101: SPEVCGKLTF PVSLKQPGPR DGMIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR TRRTTCTEYV ISMDAENISR SSNTYIGKLR SNFLGTKFVI
201: YDTQPPYTFA NVPPPGRTSR RFYSKKVSPK VPTGSYSIAQ IKYELNVLGT RGPRKMHCVM HSIPASAVDV GGSVPGQPEL LPRSLEDSFR SISFSKSLDH
301: SAEFSSSRFS DIVRASSSAE DDSKVKPLVL KNKSPRWHEQ LQCWCLNFRG RVTVASVKNF QLIAAHQPPA GGPTTSRSSQ SDHDKVILQF GKIGKDMFTM
401: DYRYPLSAVQ AFAICLSSFD TKLACE
001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
Arabidopsis Description
TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.