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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400027634 Potato cytosol 91.97 59.02
KRH21016 Soybean cytosol 22.49 56.0
VIT_05s0020g01930.t01 Wine grape cytosol 57.03 40.57
KRH11270 Soybean cytosol 61.85 40.0
KRH50928 Soybean cytosol 55.82 38.72
Solyc09g074510.2.1 Tomato cytosol 60.24 37.88
KRH02194 Soybean cytosol 55.82 35.46
KRH21017 Soybean mitochondrion 39.76 34.14
Solyc07g062390.2.1 Tomato mitochondrion 44.18 28.5
Solyc10g046970.1.1 Tomato mitochondrion 47.39 27.7
Solyc01g104670.2.1 Tomato cytosol 47.39 27.63
Solyc04g071440.2.1 Tomato mitochondrion 46.59 27.23
Solyc04g071750.2.1 Tomato cytosol 43.37 27.0
Solyc02g085130.2.1 Tomato cytosol 43.78 26.52
Solyc03g033980.2.1 Tomato cytosol 42.97 26.35
Solyc02g062670.2.1 Tomato cytosol 42.17 25.55
AT1G61940.2 Thale cress cytosol 22.49 21.13
Solyc03g117730.2.1 Tomato cytosol 14.86 9.11
Protein Annotations
EnsemblPlants:Solyc01g067680.2.1EnsemblPlantsGene:Solyc01g067680.2Gene3D:1.20.1280.50Gene3D:3.20.90.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:IPR025659InterPro:Tubby-like_C
InterPro:Tubby_CPANTHER:PTHR16517PANTHER:PTHR16517:SF36PFAM:PF00646PFAM:PF01167PRINTS:PR01573
SUPFAM:SSF54518SUPFAM:SSF81383UniParc:UPI0002763167UniProt:K4AX16MapMan:15.5.21:
Description
No Description!
Coordinates
chr1:-:76561051..76564258
Molecular Weight (calculated)
27740.5 Da
IEP (calculated)
9.512
GRAVY (calculated)
-0.301
Length
249 amino acids
Sequence
(BLAST)
001: MKWGYGSKSR CRQSSVVAVA EETEGIDEVF VESCWANLPL ELLREVLMRI EDTESKWPLR RSVVACSGVC RSWREIMKEL VKTPEVSGKL TFPISVKQPG
101: PRDTLLQCFI KRNQTTQAYH LYLSLTQALA DDGKFLLAAR KYRKATCTDY TISLDANETS KGGGTCIGRL RSNFLGTKFT AYDSILPYAG AKLVKSRSTR
201: LVGSKQMNSR VPAGNYEVAH ISYELNVLGA RKGAKKNALC DGCYPSFCH
Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)
001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE
Arabidopsis Description
AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.