Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058090 | Potato | cytosol | 97.78 | 97.78 |
| Solyc04g071750.2.1 | Tomato | cytosol | 93.1 | 94.5 |
| Solyc02g062670.2.1 | Tomato | cytosol | 81.77 | 80.78 |
| Solyc02g085130.2.1 | Tomato | cytosol | 80.3 | 79.32 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 78.57 | 77.24 |
| GSMUA_Achr2P23080_001 | Banana | cytosol | 25.12 | 75.0 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 32.76 | 74.72 |
| KRH76777 | Soybean | cytosol | 75.37 | 73.73 |
| KRH28692 | Soybean | cytosol | 74.38 | 72.95 |
| KRH69894 | Soybean | cytosol | 73.89 | 72.46 |
| KRH08239 | Soybean | cytosol | 72.91 | 71.5 |
| GSMUA_Achr6P09030_001 | Banana | cytosol | 61.58 | 69.06 |
| CDY25159 | Canola | cytosol | 61.08 | 66.13 |
| Bra039620.1-P | Field mustard | cytosol | 61.33 | 65.87 |
| CDY46301 | Canola | cytosol | 61.33 | 65.87 |
| TraesCS6B01G300200.1 | Wheat | cytosol | 67.98 | 64.79 |
| TraesCS6D01G252800.1 | Wheat | cytosol | 67.73 | 64.71 |
| HORVU6Hr1G068970.3 | Barley | cytosol | 67.49 | 64.17 |
| TraesCS6A01G272800.1 | Wheat | cytosol | 67.73 | 64.1 |
| AT2G18280.2 | Thale cress | cytosol | 61.82 | 63.71 |
| Zm00001d051568_P001 | Maize | cytosol | 67.24 | 62.61 |
| EES07397 | Sorghum | cytosol | 66.75 | 62.59 |
| Zm00001d017773_P001 | Maize | cytosol | 67.24 | 62.47 |
| GSMUA_Achr2P22940_001 | Banana | cytosol | 56.4 | 62.4 |
| CDY65687 | Canola | cytosol, mitochondrion | 54.68 | 59.36 |
| Bra040862.1-P | Field mustard | mitochondrion, nucleus | 57.39 | 58.84 |
| CDY17028 | Canola | mitochondrion, nucleus | 56.9 | 58.48 |
| Bra015624.1-P | Field mustard | cytosol, mitochondrion | 57.39 | 57.82 |
| AT1G47270.1 | Thale cress | nucleus | 57.64 | 56.66 |
| CDY10578 | Canola | mitochondrion | 5.67 | 54.76 |
| Solyc10g046970.1.1 | Tomato | mitochondrion | 57.39 | 54.69 |
| Solyc09g074510.2.1 | Tomato | cytosol | 52.71 | 54.04 |
| Solyc01g104670.2.1 | Tomato | cytosol | 56.4 | 53.63 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 38.92 | 53.2 |
| Solyc04g071440.2.1 | Tomato | mitochondrion | 54.68 | 52.11 |
| Solyc07g062390.2.1 | Tomato | mitochondrion | 45.57 | 47.93 |
| Solyc01g067680.2.1 | Tomato | cytosol | 26.35 | 42.97 |
| GSMUA_Achr2P23070_001 | Banana | cytosol, mitochondrion | 19.95 | 41.12 |
| GSMUA_Achr10P... | Banana | nucleus | 20.94 | 40.48 |
| CDY06747 | Canola | cytosol, mitochondrion | 54.19 | 38.06 |
| Zm00001d033948_P004 | Maize | cytosol | 15.27 | 34.25 |
| Solyc03g117730.2.1 | Tomato | cytosol | 21.18 | 21.18 |
Protein Annotations
| MapMan:15.5.21 | Gene3D:3.20.90.10 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001810 | InterPro:IPR025659 | UniProt:K4BFS0 |
| PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01200 | ScanProsite:PS01201 | PANTHER:PTHR16517 |
| PANTHER:PTHR16517:SF74 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc03g033980.2 | EnsemblPlants:Solyc03g033980.2.1 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI0002767BB5 | SEG:seg | : | : |
Description
Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:K4BFS0]
Coordinates
chr3:+:5676657..5678885
Molecular Weight (calculated)
45527.4 Da
IEP (calculated)
9.668
GRAVY (calculated)
-0.338
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFKSIVREL KEMKDGIGSI SRRGEVEGRH WRNRTRTHIA PDVVPFDPNQ QGQWANIPPE LLLDIVRRVE ESETSFPART AVVFCASVCK SWREVTKEIV
101: KTPEECGRLT FPISLKQPGP RESPIHCFIK RDRANSVYRL YFGLTPSEDE SDKLLLAAKR IRRATSTDFV ISLVSDDFSR ASSTYVGKLR SNFLGTKFTI
201: YDNQLPSEAA IPHRGRLSRR FSTKQVSPTV SACNYSIATV SYELNVLRTR GPRRMHCAMH SIPFSSIQEG GSAPTPTSFP QHFDEKSSPA LVSKAKEPSV
301: NSSSTVSVLS REPLVLKNKA PRWHEQLQCW CLNFKGRVTV ASVKNFQLVA AVDPSHNIPA AVQETTILQF GKIGKDIFTM DYCYPLSAFQ AFAICLSSFD
401: TKPACE
101: KTPEECGRLT FPISLKQPGP RESPIHCFIK RDRANSVYRL YFGLTPSEDE SDKLLLAAKR IRRATSTDFV ISLVSDDFSR ASSTYVGKLR SNFLGTKFTI
201: YDNQLPSEAA IPHRGRLSRR FSTKQVSPTV SACNYSIATV SYELNVLRTR GPRRMHCAMH SIPFSSIQEG GSAPTPTSFP QHFDEKSSPA LVSKAKEPSV
301: NSSSTVSVLS REPLVLKNKA PRWHEQLQCW CLNFKGRVTV ASVKNFQLVA AVDPSHNIPA AVQETTILQF GKIGKDIFTM DYCYPLSAFQ AFAICLSSFD
401: TKPACE
001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG
Arabidopsis Description
TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.