Factsheet for Solyc04g071440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061933	Potato	cytosol	99.53	99.53
VIT_18s0072g00630.t01	Wine grape	cytosol	84.04	84.24
HORVU5Hr1G023650.1	Barley	plastid	46.95	82.99
KRH08694	Soybean	mitochondrion	80.99	81.37
KRH70303	Soybean	cytosol	80.99	81.37
KRG91652	Soybean	cytosol, mitochondrion	81.92	81.16
KRH35144	Soybean	cytosol, mitochondrion	81.69	80.93
Solyc01g104670.2.1	Tomato	cytosol	79.11	78.92
Solyc10g046970.1.1	Tomato	mitochondrion	76.29	76.29
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	75.35	75.0
KXG23034	Sorghum	cytosol, mitochondrion	73.24	71.4
TraesCS4D01G110100.1	Wheat	golgi	73.71	71.36
Os12t0163400-01	Rice	cytosol	74.41	71.24
TraesCS5A01G124100.1	Wheat	cytosol	73.24	71.07
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	73.24	70.91
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	73.24	70.91
TraesCS5B01G123800.1	Wheat	golgi	73.0	70.84
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	72.77	70.61
Zm00001d053179_P001	Maize	cytosol	72.07	68.53
EES08030	Sorghum	cytosol, mitochondrion	71.13	66.45
GSMUA_Achr11P...	Banana	cytosol	59.39	60.96
Solyc09g074510.2.1	Tomato	cytosol	55.16	59.34
Solyc03g033980.2.1	Tomato	cytosol	52.11	54.68
Solyc02g062670.2.1	Tomato	cytosol	52.58	54.5
Solyc04g071750.2.1	Tomato	cytosol	51.17	54.5
Solyc02g085130.2.1	Tomato	cytosol	52.35	54.26
Solyc07g062390.2.1	Tomato	mitochondrion	44.6	49.22
Solyc01g067680.2.1	Tomato	cytosol	27.23	46.59
Solyc03g117730.2.1	Tomato	cytosol	22.3	23.4

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659
UniProt:K4BTD6	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF31	SUPFAM:SSF54518	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc04g071440.2	EnsemblPlants:Solyc04g071440.2.1
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000276684A	SEG:seg	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:K4BTD6]

Coordinates

chr4:+:58421231..58424812

Molecular Weight (calculated)

47605.0 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.341

Length

426 amino acids

Sequence
(BLAST)

001: MSFRSIARDI RDSIGSLSRR SFEVKLSSHN RGKSQSAVHE LHDHAIVIQS SCWASLPPEL LRDVIKRLEA SESTWPARKH VVACAAVCRS WREMCQEIVQ
101: RPEFSGKLTF PISLKQPGFR DGTIQCFIRR DKSKLTYQLF LCLSPALLVE NGKFLLSAKR NRRTTCTEYI ISMNADNISR SNSSYIGKLR SNFLGTKFII
201: YDTQPPYNSS SIPPPGGSRR FYSKKVSPKV PTGTYNIAQV SYELNVLGTR GPRRMNCVMH SIPVSSLEPG GTVPGQPELL PPNLEDSFRS MSFSKSIDAS
301: TEFNSARFSD IGGPSEVDEE GKSSLLVLRN KAPRWHEQLQ CWCLNFRGRV TVASVKNFQL IAATQRAASA PTPAQPAQSS SDQDKIILQF GKVGKDMFTM
401: DYRYPLSAFQ AFAICLSSFD TKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.