CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G124100.1	Wheat	cytosol	84.9	84.51
TraesCS5B01G123800.1	Wheat	golgi	84.44	84.05
Os12t0163400-01	Rice	cytosol	85.58	84.04
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	84.21	83.83
HORVU5Hr1G040000.2	Barley	cytosol	83.52	83.14
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	74.6	76.17
VIT_18s0072g00630.t01	Wine grape	cytosol	73.68	75.76
KRH10476	Soybean	cytosol, mitochondrion	72.77	74.47
VIT_12s0055g00460.t01	Wine grape	mitochondrion	72.08	74.29
EES08030	Sorghum	cytosol, mitochondrion	76.89	73.68
KRH43964	Soybean	cytosol, mitochondrion	71.85	73.54
PGSC0003DMT400061933	Potato	cytosol	71.4	73.24
Solyc04g071440.2.1	Tomato	mitochondrion	71.4	73.24
KRH08694	Soybean	mitochondrion	70.71	72.88
KRH70303	Soybean	cytosol	70.48	72.64
PGSC0003DMT400076537	Potato	cytosol	70.71	72.37
Solyc01g104670.2.1	Tomato	cytosol	70.48	72.13
KRH35144	Soybean	cytosol, mitochondrion	70.48	71.63
KRG91652	Soybean	cytosol, mitochondrion	70.48	71.63
EES19596	Sorghum	mitochondrion	73.68	71.56
Solyc10g046970.1.1	Tomato	mitochondrion	69.34	71.13
PGSC0003DMT400002858	Potato	mitochondrion	68.42	70.19
CDY45959	Canola	cytosol	65.22	66.43
CDY13570	Canola	cytosol	64.53	66.35
Bra040803.1-P	Field mustard	cytosol	66.82	65.32
CDX84977	Canola	cytosol	62.47	65.0
CDY66464	Canola	cytosol	63.62	64.8
AT1G76900.1	Thale cress	cytosol	67.28	64.62
Bra024763.1-P	Field mustard	cytosol	64.76	64.61
Bra012486.1-P	Field mustard	cytosol	65.22	64.33
CDY36119	Canola	cytosol	62.01	64.22
EES01812	Sorghum	mitochondrion	70.48	64.17
CDY72036	Canola	cytosol	64.99	64.11
CDY42119	Canola	cytosol	64.07	64.07
AT1G43640.1	Thale cress	cytosol	62.7	63.87
AT1G25280.1	Thale cress	cytosol	64.76	63.6
CDY51990	Canola	cytosol	61.33	63.36
Bra010985.1-P	Field mustard	cytosol	63.62	63.33
KXG24166	Sorghum	cytosol	64.53	62.95
OQU82627	Sorghum	cytosol	65.22	62.91
CDY65845	Canola	cytosol, mitochondrion	64.53	62.67
CDX87562	Canola	cytosol, mitochondrion	64.53	62.53
Bra015711.1-P	Field mustard	cytosol, mitochondrion	65.45	61.51
GSMUA_Achr11P...	Banana	cytosol	56.52	59.52
KXG39376	Sorghum	cytosol, plastid	53.78	58.9
EES03425	Sorghum	plastid	43.94	53.33
EES07397	Sorghum	cytosol	51.95	52.42
EER97690	Sorghum	cytosol	46.22	50.63
EES18499	Sorghum	mitochondrion	40.5	47.58
OQU78419	Sorghum	cytosol	38.9	45.09
KXG29622	Sorghum	plastid	19.91	20.52

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	UniProt:A0A1B6PBC9	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	ProteinID:KXG23033.1	EnsemblPlants:KXG23034
ProteinID:KXG23034	ProteinID:KXG23034.1	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43	EnsemblPlantsGene:SORBI_3008G047400	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0001C80888	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:4664024..4669091

Molecular Weight (calculated)

48857.7 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.302

Length

437 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR GFEVKILGHR RGRSHGAVHE LHDPAPVIQS SCWANLPPEL LRDVIERLEA SEATWPNRKN VVSCAAVCRT WREICKEIVK
101: NPEFSGKITF PVSLKQPGPR DVTIQCFIKR DKSTQTYYLY LCLSTAVLVE SGKFLLCAKR TSRPTCTEYT IFMNSENLSR SSKMYIGKLR SNLLGTKFAI
201: YDTQPPCNTS QPGKTSRRFY SRKVSPKVSS RTYNIAQVSY ELNVLGTRGP RRMNCVMHSI PASCLEAGGT VPCQPDSILA RSIDESFGSI SFSKSSVVDH
301: SMRFSSTRFS EISMSSHTIG DAALGDNDEC KDRPLILRNK APRWHEQLQC WCLNFKGRVT VASVKNFQLV AATQPSAGAP TLSSQATPVP PPEHEKVILQ
401: FGKVAKDMFT MDYRYPLSAF QAFAICLSSF DTKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.